CK933163

Overview
NameCK933163
Unique NameCK933163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933163_ssr414 microsatellite CK933163_ssr414:414..428. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:1..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.958e-19
Identity = 48/96 (50.00%), Postives = 67/96 (69.79%), Query Frame = 2
Query:   53 VPILSFL----LMASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            VP+ S L    LM++     + F+GGL+W T D+SL +AF  +GD++++K+I DRETGRSRGFGFV F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   83 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG L+W   D +L E F   G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            +R +VG + W   D+ L + F  +G ++ ++++ DRETGRSRGFGFVT   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.542e-16
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   83 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG L+W   D +L E F   G+++++K++ DR++GRSRGFGFVT+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            FR +VG L W   +  L + F  +G ++E++++ DRETGRSRGFGFVT  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.030e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL + TT+ SL + F  YG + E  ++ DRE+ RSRGFGFVTF + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.346e-15
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2
Query:   86 GDVEFRC--FVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            GD E  C  +VG L W    S L + F  +G ++ +++++DRETGRSRGFGFVT   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  143 GDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL++ T + SL + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.296e-15
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL++ T + SL + F  YG I E  ++ DRET RSRGFGFVTF +    +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK933163 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            +R +VG + W   D+ L + F  +G ++ ++++ DRE+GRSRGFGFVT   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
The following BLAST results are available for this feature:
BLAST of CK933163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GRP2_ARATH9.958e-1950.00Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY2.076e-1645.7829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC4_NICSY2.712e-1647.4431 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICPL3.542e-1645.7831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH7.890e-1647.4431 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_XENTR1.030e-1548.72Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
ROC1_SPIOL1.346e-1546.4328 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
CIRBP_PONAB2.296e-1550.00Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN2.296e-1550.00Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC3_NICSY3.916e-1544.8728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933163 ID=CK933163; Name=CK933163; organism=Citrus sinensis; type=EST; length=776bp
GGGGATTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTCT
TAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTTT
AGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCGA
CGGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCG
GTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGATA
CGAAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGATACA
GCCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGC
GGTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAAAT
TAGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATGTT
GTGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGATCTCCCTGT
TTGGTTAATTGTTTGAAAAAAAAATGAAATGAATTACAGTTCTTTTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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