CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NATTJ (GTPase obg OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=obg PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.687e-15
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +R  +PK   P+ S+  +   E+ I+       ++G++G PNVGKSTL + +TK +   +++ F T+ PN   V + +  RF                  + DI GL+ GAH+G+GLG+ FL HI     + HV+      DI  ++   DPV D+E I+ EL+  +   M++
Sbjct:  127 TRFANPKNKAPRFSEDGKPGEEKWIVLELKVMAEVGLIGYPNVGKSTLLSQVTKASPKIDSYHFTTLNPNLGVVELEEGSRF-----------------VMADIPGLIEGAHQGRGLGDQFLRHIERTKMLIHVI------DIASIEGR-DPVLDIETINEELKGYNSRVMDK 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_THEPX (GTPase obg OS=Thermoanaerobacter sp. (strain X514) GN=obg PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 2
Query:   83 SPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRL 562
            +P L  P+ ++S E   E  +         +G++G PN GKSTL  + T+      N+PF T+ PN   V              K KS V A     DI GL+ GAH G+GLG+ FL HI     + HV+        +   +  DP+ D E I+ EL+L
Sbjct:  131 TPTLKTPRFAESGEKGKEMWVRLELKLLADVGLIGFPNAGKSTLLASCTRAKPKIANYPFTTLTPNLGVVE------------HKGKSFVMA-----DIPGLIEGAHRGEGLGHDFLRHIERTKMLIHVVD-------VSASEGRDPIEDFEKINEELKL 266          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_THEP3 (GTPase obg OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=obg PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 2
Query:   83 SPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRL 562
            +P L  P+ ++S E   E  +         +G++G PN GKSTL  + T+      N+PF T+ PN   V              K KS V A     DI GL+ GAH G+GLG+ FL HI     + HV+        +   +  DP+ D E I+ EL+L
Sbjct:  131 TPTLKTPRFAESGEKGKEMWVRLELKLLADVGLIGFPNAGKSTLLASCTRAKPKIANYPFTTLTPNLGVVE------------HKGKSFVMA-----DIPGLIEGAHRGEGLGHDFLRHIERTKMLIHVVD-------VSASEGRDPIEDFEKINEELKL 266          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_POLSQ (GTPase obg OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=obg PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.372e-15
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKSTL   ++       ++PF T+ PN   V + +ER               +F+ I DI GL+ GA EG GLG+ FL H++  G + H++      DI   D+++DPV D   I  ELR  D   +E+
Sbjct:  162 VGLLGMPNAGKSTLITAVSNARPKIADYPFTTLHPNLGVVRVGNER---------------SFV-IADIPGLIEGAAEGAGLGHRFLRHLQRTGVLLHLV------DIAPFDENIDPVADAVAIVNELRKYDEALVEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CLOTH (GTPase obg OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=obg PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.093e-14
Identity = 56/168 (33.33%), Postives = 79/168 (47.02%), Query Frame = 2
Query:   83 SPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +P    P  +K  E   E  ++        +G++G PNVGKST+ + +T       N+ F TI PN   VNI  E                AF+ + DI GL+ GAH+G GLG+ FL HI     + HV+        I   +  DPV+D EVI+ EL+  +    ER
Sbjct:  131 TPTRQVPSFAKPGEPGEELWVILELKLLADVGLIGFPNVGKSTILSMVTAAQPKIANYHFTTINPNLGVVNIDAEN---------------AFV-MADIPGLIEGAHQGVGLGHEFLKHIERTKLLIHVVD-------ISGSEGRDPVQDFEVINEELKKYNPVLCER 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_THEM4 (GTPase obg OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=obg PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 56/188 (29.79%), Postives = 87/188 (46.28%), Query Frame = 2
Query:   83 SPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHV--LRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 640
            S  +  PK S+      ER ++        +G+VG PNVGKS+  + ++       N+PF T+ PN   V + D +F                  + DI GL++GA +G GLGN FL H+     I H+  +  FE  D   V+D  D  R+LE  S +L  K+   +  +I+ + K       ++LK
Sbjct:  135 SSTMRTPKISERGAEGEERKLILELKLLADVGLVGYPNVGKSSFISKISNAKPKIANYPFTTLIPNLGVVQVDDLQF-----------------VVADIPGLIKGASKGVGLGNVFLRHVERCSVIVHIVDISGFEGRD--PVNDYFDIRRELEYFSEDLAKKEEIIVANKIDLLSKEELEERIQKLK 303          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_POLNS (GTPase obg OS=Polynucleobacter necessarius (strain STIR1) GN=obg PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.865e-14
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKSTL   ++       ++PF T+ PN   V +  ER               +F+ I DI GL+ GA EG GLG+ FL H++  G + H++      DI   D +VDPV D   I  ELR  D   +E+
Sbjct:  162 VGLLGMPNAGKSTLITAVSNARPKIADYPFTTLHPNLGVVRVGSER---------------SFV-IADIPGLIEGAAEGAGLGHRFLRHLQRTGVLLHLV------DIAPFDANVDPVADAAAIVNELRKYDEALVEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CHRVO (GTPase obg OS=Chromobacterium violaceum GN=obg PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 57/180 (31.67%), Postives = 86/180 (47.78%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEF--MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 706
            +G++G+PN GKST   +++       ++PF T+ PN   V + D R               +F+ I DI GL+ GA EG GLG+ FL H++  G + HV+      DI   D  VDPVR+   I  EL+  D E     R +   +  M   ++++L +   L      W Q+  D  LG
Sbjct:  162 VGLLGMPNAGKSTFIRSVSAARPKVADYPFTTLHPNLGVVRMDDTR---------------SFV-IADIPGLIEGAAEGAGLGHRFLKHLQRTGLLLHVV------DIAPFDPDVDPVREARAIVEELKKFDEELHGKPRWLVLNKVDMLPEDERELTVSAFL--NAYGWPQERPDDSLG 317          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_DESHY (GTPase obg OS=Desulfitobacterium hafniense (strain Y51) GN=obg PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.427e-14
Identity = 70/231 (30.30%), Postives = 102/231 (44.16%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAK 763
            +R +S     P  +++ E   ER +L        +G+VG PNVGKST+ + ++       ++ F T+ PN   V + D                 +F+ + DI GL+ GAH G GLG+ FL H      IFHVL      DI   ++  DP+ D ++I+ ELR    E   R I  V      +N   +    E  QR+   L  G+D R+    AA  E L       AK
Sbjct:  127 ARFMSNTNKAPTVAENGEPGEERNLLLELKLLADVGLVGFPNVGKSTIISRISAAKPKIADYHFTTLVPNLGVVELEDGE---------------SFV-VADIPGLIEGAHTGAGLGHEFLRHTERTRLIFHVL------DIAGSEER-DPLEDFQIIAEELRQYSQELANRPILIV------ANKMDIPGAEENLQRLTEKL--GEDYRIFPVSAATGEGLKELVYAAAK 326          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_ACIC5 (GTPase obg OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=obg PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.427e-14
Identity = 53/166 (31.93%), Postives = 78/166 (46.99%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVK 670
            IGIVG PNVGKSTL + ++       ++PF T+EPN   V + +   E                 + DI GL+ GAHEG GLG+ FL H+     + H++      D+       DPV D + I+AEL     E  ++ +  V   +   N  +LK    + +R K
Sbjct:  161 IGIVGYPNVGKSTLISRISAAKPKIADYPFTTLEPNLGVVTVGEMPHE-------------ETFVVADIPGLIEGAHEGAGLGDRFLRHVERTHLLVHLV------DVSDASGRPDPVADYKTIAAELANFGGELEDKPVIVVASKIDSVNPDKLKKLAAMAKRRK 307          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_NATTJ1.687e-1531.21GTPase obg OS=Natranaerobius thermophilus (strain ... [more]
OBG_THEPX8.372e-1533.13GTPase obg OS=Thermoanaerobacter sp. (strain X514)... [more]
OBG_THEP38.372e-1533.13GTPase obg OS=Thermoanaerobacter pseudethanolicus ... [more]
OBG_POLSQ8.372e-1534.78GTPase obg OS=Polynucleobacter sp. (strain QLW-P1D... [more]
OBG_CLOTH1.093e-1433.33GTPase obg OS=Clostridium thermocellum (strain ATC... [more]
OBG_THEM41.428e-1429.79GTPase obg OS=Thermosipho melanesiensis (strain BI... [more]
OBG_POLNS1.865e-1435.51GTPase obg OS=Polynucleobacter necessarius (strain... [more]
OBG_CHRVO3.181e-1431.67GTPase obg OS=Chromobacterium violaceum GN=obg PE=... [more]
OBG_DESHY5.427e-1430.30GTPase obg OS=Desulfitobacterium hafniense (strain... [more]
OBG_ACIC55.427e-1431.93GTPase obg OS=Acidobacterium capsulatum (strain AT... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
back to top