CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURVG (GTPase obg OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=obg PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.087e-14
Identity = 52/160 (32.50%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV + + I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLRLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDESVDPVAEAKAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NEIM0 (GTPase obg OS=Neisseria meningitidis serogroup C (strain 053442) GN=obg PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.256e-14
Identity = 52/158 (32.91%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 574
            PK S   E    R +         +G++G+PN GKSTL   ++       N+PF T+ PN   V I DE   ++               + DI GL+ GA EG GLG+ FL H+   G + HV+      D+   D++VDP  +   I  ELR  D E
Sbjct:  138 PKQSTPGEEGETRSLQLELKVLADVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRI-DENHSFV---------------MADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVV------DLAPFDEAVDPAEEALAIINELRKYDEE 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURS3 (GTPase obg OS=Burkholderia sp. (strain 383) GN=obg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLRLELKVLADVGLLGMPNAGKSTFISSVSNARPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDESVDPVAEATAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURP8 (GTPase obg OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=obg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKST  ++++       ++PF T+ PN   V +   R               +F+ I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D++VDPV + + I  ELR  D E   +
Sbjct:  162 VGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSR---------------SFV-IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DLAPFDETVDPVAEAKAIVNELRKYDEELFSK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURCJ (GTPase obg OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=obg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDESVDPVAEATAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURCH (GTPase obg OS=Burkholderia cenocepacia (strain HI2424) GN=obg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDESVDPVAEATAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURCC (GTPase obg OS=Burkholderia cenocepacia (strain MC0-3) GN=obg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDESVDPVAEATAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURCA (GTPase obg OS=Burkholderia cenocepacia (strain AU 1054) GN=obg PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.209e-13
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGVLLHLV------DLAPFDESVDPVAEATAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_ROSS1 (GTPase obg OS=Roseiflexus sp. (strain RS-1) GN=obg PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 53/162 (32.72%), Postives = 72/162 (44.44%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            P+ ++  E    R I         +G+VG PN GKSTL + ++        +PF T++PN   V + D  F                  + DI GL+ GAH G GLG SFL HI     + H++      D   VD   DPV D   I+ ELRL   E  +R
Sbjct:  141 PRIAELGEPGERREIELELKLLADVGLVGFPNAGKSTLLSVISAARPKIAPYPFTTLQPNLGVVEVGDYSF-----------------VVADIPGLIEGAHRGVGLGFSFLRHIERTRLLIHII------DAAGVDGR-DPVGDFHAINEELRLYQPELAQR 278          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURXL (GTPase obg OS=Burkholderia xenovorans (strain LB400) GN=obg PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.579e-13
Identity = 45/132 (34.09%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            +G++G+PN GKST  ++++       ++PF T+ PN   V +   R               +F+ I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+SVDPV + + I  ELR  D
Sbjct:  162 VGLLGMPNAGKSTFISSVSNARPKIADYPFTTLAPNLGVVRVGPSR---------------SFV-IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DLAPFDESVDPVAEAKAIVNELRKYD 271          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_BURVG7.087e-1432.50GTPase obg OS=Burkholderia vietnamiensis (strain G... [more]
OBG_NEIM09.256e-1432.91GTPase obg OS=Neisseria meningitidis serogroup C (... [more]
OBG_BURS31.209e-1332.50GTPase obg OS=Burkholderia sp. (strain 383) GN=obg... [more]
OBG_BURP81.209e-1332.61GTPase obg OS=Burkholderia phymatum (strain DSM 17... [more]
OBG_BURCJ1.209e-1332.50GTPase obg OS=Burkholderia cepacia (strain J2315 /... [more]
OBG_BURCH1.209e-1332.50GTPase obg OS=Burkholderia cenocepacia (strain HI2... [more]
OBG_BURCC1.209e-1332.50GTPase obg OS=Burkholderia cenocepacia (strain MC0... [more]
OBG_BURCA1.209e-1332.50GTPase obg OS=Burkholderia cenocepacia (strain AU ... [more]
OBG_ROSS11.579e-1332.72GTPase obg OS=Roseiflexus sp. (strain RS-1) GN=obg... [more]
OBG_BURXL1.579e-1334.09GTPase obg OS=Burkholderia xenovorans (strain LB40... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
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