CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CORGB (GTPase obg OS=Corynebacterium glutamicum (strain R) GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 48/159 (30.19%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  107 ASKSKEAPA---------ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAEL 556
            ASK+++AP             ++    S   +G+VG P+ GKS+L + ++       ++PF T++PN   VN+  E F                  + D+ GL+ GA EG+GLG  FL HI     + HV+      D   +D   DP+ D+E + AEL
Sbjct:  131 ASKARKAPGFALIGEPGEAHDLILELKSMADVGLVGFPSAGKSSLISVMSAAKPKIGDYPFTTLQPNLGVVNVGHETF-----------------TMADVPGLIPGASEGKGLGLDFLRHIERTSVLVHVV------DTATMDPGRDPISDIEALEAEL 266          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURPP (GTPase obg OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            +G++G+PN GKST   +++       ++PF T+ PN   V +   R               +F+ I DI GL+ GA EG GLG+ FL H++  G + H++      D+   DD+VDPV + + I  ELR  D
Sbjct:  162 VGLLGMPNAGKSTFIASVSNAKPKIADYPFTTLAPNLGVVRVGPSR---------------SFV-IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DLAPFDDAVDPVAEAKAIVNELRKYD 271          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURM1 (GTPase obg OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 52/160 (32.50%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      DI   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPSKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DIAPFDEGVDPVAEATAIVGELRKYDEALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_AQUAE (GTPase obg OS=Aquifex aeolicus GN=obg PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.693e-13
Identity = 60/219 (27.40%), Postives = 104/219 (47.49%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRA--FEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDG-KDVRLGDWK 715
            +R  +P    P  ++  +   ER I+        +G+VG PN GKSTL + LT+      ++PF T+ PN   + +  ER                 L I DI GL+  AH+G GLG+ FL HI     + HV+    F + + +   ++++  R+LE+ S +L  K    +  +I+ + ++S+    +K  K +      V A   +G ++++ G WK
Sbjct:  129 ARFATPTNQAPTYAEKGQKGEERWIILELKLIADVGLVGFPNAGKSTLLSRLTRAKPKIADYPFTTLSPNLGVMELDWER----------------RLVIADIPGLIEDAHKGAGLGHEFLRHIERTKFLAHVIDVSDFREREPVQAFEAIN--RELELYSPKLAQKPQIVVANKIDALSDRSLLSELEKYFKEKGYEFYAVSALTGEGIEELKEGLWK 329          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NEIMF (GTPase obg OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 574
            PK S   E    R +         +G++G+PN GKSTL   ++       N+PF T+ PN   V I DE   ++               + DI GL+ GA EG GLG+ FL H+   G + HV+      D+   D++V+P  +   I  ELR  D E
Sbjct:  138 PKQSTPGEEGEARSLQLELKVLADVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRI-DENHSFV---------------MADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVV------DLAPFDETVNPAEEALAIINELRKYDEE 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NEIMB (GTPase obg OS=Neisseria meningitidis serogroup B GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 574
            PK S   E    R +         +G++G+PN GKSTL   ++       N+PF T+ PN   V I DE   ++               + DI GL+ GA EG GLG+ FL H+   G + HV+      D+   D++V+P  +   I  ELR  D E
Sbjct:  138 PKQSTPGEEGEARSLQLELKVLADVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRI-DENHSFV---------------MADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVV------DLAPFDETVNPAEEALAIINELRKYDEE 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NEIMA (GTPase obg OS=Neisseria meningitidis serogroup A GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 574
            PK S   E    R +         +G++G+PN GKSTL   ++       N+PF T+ PN   V I DE   ++               + DI GL+ GA EG GLG+ FL H+   G + HV+      D+   D++V+P  +   I  ELR  D E
Sbjct:  138 PKQSTPGEEGEARSLQLELKVLADVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRI-DENHSFV---------------MADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVV------DLAPFDETVNPAEEALAIINELRKYDEE 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NEIG2 (GTPase obg OS=Neisseria gonorrhoeae (strain NCCP11945) GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 574
            PK S   E    R +         +G++G+PN GKSTL   ++       N+PF T+ PN   V I DE   ++               + DI GL+ GA EG GLG+ FL H+   G + HV+      D+   D++V+P  +   I  ELR  D E
Sbjct:  138 PKQSTPGEEGETRSLQLELKVLADVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRI-DENHSFV---------------MADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVV------DLAPFDETVNPAEEALAIINELRKYDEE 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_NEIG1 (GTPase obg OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 574
            PK S   E    R +         +G++G+PN GKSTL   ++       N+PF T+ PN   V I DE   ++               + DI GL+ GA EG GLG+ FL H+   G + HV+      D+   D++V+P  +   I  ELR  D E
Sbjct:  138 PKQSTPGEEGETRSLQLELKVLADVGLLGMPNAGKSTLITAVSAARPKIANYPFTTLHPNLGVVRI-DENHSFV---------------MADIPGLIEGAAEGAGLGHRFLKHLSRTGLLLHVV------DLAPFDETVNPAEEALAIINELRKYDEE 273          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_GEOUR (GTPase obg OS=Geobacter uraniireducens (strain Rf4) GN=obg PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.517e-13
Identity = 53/163 (32.52%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 589
            PK ++  E   ER +         +G++G+P+VGKS+L + ++       ++ F T++PN   V   +            KS V A     DI GL+ GAHEG GLG+ FL H+   G + H+L      DI  + D  DP+R+ E I+ EL L + E  E++
Sbjct:  138 PKFAQPGEPGEERWLRLELKLMADVGLLGMPSVGKSSLISKISAARPKIADYHFTTLKPNLGVVAYKNY-----------KSFVMA-----DIPGLIEGAHEGAGLGHRFLKHLERTGQLIHIL------DISWMPDR-DPLREYEAINRELALFNPELAEKK 277          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_CORGB2.693e-1330.19GTPase obg OS=Corynebacterium glutamicum (strain R... [more]
OBG_BURPP2.693e-1334.09GTPase obg OS=Burkholderia phytofirmans (strain DS... [more]
OBG_BURM12.693e-1332.50GTPase obg OS=Burkholderia multivorans (strain ATC... [more]
OBG_AQUAE2.693e-1327.40GTPase obg OS=Aquifex aeolicus GN=obg PE=3 SV=1[more]
OBG_NEIMF3.517e-1332.28GTPase obg OS=Neisseria meningitidis serogroup C /... [more]
OBG_NEIMB3.517e-1332.28GTPase obg OS=Neisseria meningitidis serogroup B G... [more]
OBG_NEIMA3.517e-1332.28GTPase obg OS=Neisseria meningitidis serogroup A G... [more]
OBG_NEIG23.517e-1332.28GTPase obg OS=Neisseria gonorrhoeae (strain NCCP11... [more]
OBG_NEIG13.517e-1332.28GTPase obg OS=Neisseria gonorrhoeae (strain ATCC 7... [more]
OBG_GEOUR3.517e-1332.52GTPase obg OS=Geobacter uraniireducens (strain Rf4... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
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