CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURMS (GTPase obg OS=Burkholderia mallei (strain SAVP1) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURMA (GTPase obg OS=Burkholderia mallei GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURM9 (GTPase obg OS=Burkholderia mallei (strain NCTC 10229) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BURM7 (GTPase obg OS=Burkholderia mallei (strain NCTC 10247) GN=obg PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.594e-13
Identity = 51/160 (31.87%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  113 KSKEAPAERPILGRFSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            K+   P ER +L      L  +G++G+PN GKST  ++++       ++PF T+ PN   V + P + F                  I DI GL+ GA EG GLG+ FL H++  G + H++      D+   D+ VDPV +   I  ELR  D    E+
Sbjct:  141 KTDGKPGERRMLKLELKVLADVGLLGMPNAGKSTFISSVSNAKPKIADYPFTTLAPNLGVVRVGPGKSFV-----------------IADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHLV------DLAPFDERVDPVAEARAIVGELRKYDESLYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RICCN (GTPase obg OS=Rickettsia conorii GN=obg PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 46/143 (32.17%), Postives = 67/143 (46.85%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV 601
            +G+VGLPN GKST  + +T       ++PF T+ PN   V + DE F                  I DI GL+ GAH+G GLG+ FL HI     + H++             S D V D   +  EL L   ++++ +IE +
Sbjct:  162 VGLVGLPNAGKSTFLSVVTAAKPKIADYPFTTLVPNLGVVYVDDEEF-----------------VIADIPGLIEGAHQGHGLGDKFLKHIERCNVLIHLIDG----------SSNDVVADYNTVRLELELYS-DYLKNKIETI 276          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RALEJ (GTPase obg OS=Ralstonia eutropha (strain JMP134) GN=obg PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            +G++G+PN GKST  + ++       ++PF T+ PN   V +  E+               +F+ + DI GL+ GA EG GLG+ FL H++  G + H++      D+   D++VDPV + + I  EL+  D
Sbjct:  162 VGLLGMPNAGKSTFISHISNARPKVADYPFTTLHPNLGVVRVDHEQ---------------SFV-VADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DLAPFDEAVDPVAEAKAIVNELKKYD 271          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RALEH (GTPase obg OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=obg PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            +G++G+PN GKST  + ++       ++PF T+ PN   V +  E+               +F+ + DI GL+ GA EG GLG+ FL H++  G + H++      D+   D++VDPV + + I  EL+  D
Sbjct:  162 VGLLGMPNAGKSTFISHISNARPKVADYPFTTLHPNLGVVRVDHEQ---------------SFV-VADIPGLIEGAAEGAGLGHQFLRHLQRTGLLLHIV------DLAPFDEAVDPVAEAKAIVNELKKYD 271          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_CLOK1 (GTPase obg OS=Clostridium kluyveri (strain NBRC 12016) GN=obg PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.000e-13
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G PNVGKSTL + +TK A    N+ F T+ PN   VNIP                + +F+ I DI G++ GA EG GLG  FL HI     + H++      DI  ++   DP  D   I+ EL+  D++  +R
Sbjct:  161 VGLLGFPNVGKSTLLSVVTKAAPKIANYHFTTLSPNLGVVNIP---------------GIQSFV-IADIPGIIEGAAEGVGLGIDFLRHIERTRLLIHIV------DISGLEGR-DPFGDFIKINEELKKYDVKLWDR 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_PELTS (GTPase obg OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=obg PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRL 562
            +R ++P+   P+ ++  E   ER +         +G+VG PN GKSTL + ++       ++PF TI PN   V + D R           S V A     DI GL+ GAH+G GLG+ FL H+     + HVL            +  DPV+D  V + EL L
Sbjct:  127 ARFVTPQNRAPRMAEKGEPGEERWLDLELKLLADVGLVGFPNAGKSTLISRVSAARPKIASYPFTTITPNLGVVRVDDGR-----------SFVMA-----DIPGLIEGAHKGAGLGHDFLRHVERTRLLVHVLDTAG-------SEGRDPVQDFLVTNRELSL 267          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BACLD (GTPase obg OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=obg PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 59/196 (30.10%), Postives = 89/196 (45.41%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER---------RIEDVEKSMKRSNDK 631
            +R  +P    P+ S++ E   ER I+        +G+VG P+VGKSTL + ++       ++ F T+ PN   V   D R           S V A     D+ GL+ GAHEG GLG+ FL HI     I HV+      D+  ++   DP  D   I+ EL   ++   ER          + D E+++K   +K
Sbjct:  127 TRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLNPNLGMVETEDGR-----------SFVMA-----DLPGLIEGAHEGVGLGHQFLRHIERTRVIVHVI------DMSGLEGR-DPYEDYVTINKELEQYNLRLTERPQIIVANKMDMPDAEENLKAFKEK 299          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_BURMS4.594e-1331.88GTPase obg OS=Burkholderia mallei (strain SAVP1) G... [more]
OBG_BURMA4.594e-1331.88GTPase obg OS=Burkholderia mallei GN=obg PE=3 SV=1[more]
OBG_BURM94.594e-1331.88GTPase obg OS=Burkholderia mallei (strain NCTC 102... [more]
OBG_BURM74.594e-1331.88GTPase obg OS=Burkholderia mallei (strain NCTC 102... [more]
OBG_RICCN6.000e-1332.17GTPase obg OS=Rickettsia conorii GN=obg PE=3 SV=2[more]
OBG_RALEJ6.000e-1331.82GTPase obg OS=Ralstonia eutropha (strain JMP134) G... [more]
OBG_RALEH6.000e-1331.82GTPase obg OS=Ralstonia eutropha (strain ATCC 1769... [more]
OBG_CLOK16.000e-1335.51GTPase obg OS=Clostridium kluyveri (strain NBRC 12... [more]
OBG_PELTS7.836e-1332.32GTPase obg OS=Pelotomaculum thermopropionicum (str... [more]
OBG_BACLD7.836e-1330.10GTPase obg OS=Bacillus licheniformis (strain DSM 1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
back to top