CK933175

Overview
NameCK933175
Unique NameCK933175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RALSO (GTPase obg OS=Ralstonia solanacearum GN=obg PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 43/139 (30.94%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKSTL   ++       ++PF T+ PN   V   P + F                  + DI GL+ GA EG GLG+ FL H++    + HV+      D+   D+ +DPV + + I  EL+  D E  ++
Sbjct:  162 VGLLGMPNAGKSTLITAISNARPKIADYPFTTLHPNLGVVRTGPSKSF-----------------VVADIPGLIEGAAEGAGLGHQFLRHLQRTRVLLHVV------DLAPFDEGIDPVAEAKAIVGELKKYDAELYDK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_METFK (GTPase obg OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=obg PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 44/132 (33.33%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD 568
            +G++G+PN GKST   +++       ++PF T+ PN   V +   R               +F+ I D+ GL+ GA EG GLG+ FL H+     + H++      D+   D+SVDPVR+   I+ ELR  D
Sbjct:  162 VGLLGMPNAGKSTFIRSVSAAKPKVADYPFTTLHPNLGVVRVDANR---------------SFV-IADVPGLIEGAAEGAGLGHQFLRHLSRTRLLLHLV------DLAPFDESVDPVREALAITEELRKYD 271          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_GEOSF (GTPase obg OS=Geobacter sp. (strain FRC-32) GN=obg PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 589
            P+ ++  E   ER +         +G++G+P+VGKS+L   ++        + F T++PN   V   +            KS V A     DI GL+ GAHEG GLG+ FL H+   G + H+L      DI  + D  DP+R+ E I+ EL L + E  E++
Sbjct:  138 PRFAQPGEPGEERWLRLELKLMADVGLLGMPSVGKSSLITKVSAARPKIAEYHFTTLKPNLGVVAYKNY-----------KSFVMA-----DIPGLIEGAHEGAGLGHRFLKHLERTGHLLHIL------DISWMPDR-DPIREYEAINKELSLFNPELAEKK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BREBN (GTPase obg OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=obg PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 58/193 (30.05%), Postives = 89/193 (46.11%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER-RIEDVEKSMKRSNDKQLKIEHELCQRVKAW 676
            P  S++ E   ER I+        +G+VG P+VGKSTL +++T        + F T+ PN   V++ +  F                  + D+ GL+ GAHEG GLG+ FL H+     I HV+      D+  VD   DP  D   I+ EL L +++  +R +I    K      ++ L+I  E    VK +
Sbjct:  137 PHISENGEPGQERYIVMELKLIADVGLVGYPSVGKSTLLSSVTAAKPKIAAYHFTTLTPNLGVVDLGERSF-----------------VMADLPGLIEGAHEGVGLGHQFLRHVERTRLIVHVI------DMAAVDGR-DPYEDYLQINRELTLYNLKLEDRPQIVVANKMELPEAEENLRIFKEKAPDVKVY 305          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_BACP2 (GTPase obg OS=Bacillus pumilus (strain SAFR-032) GN=obg PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.023e-12
Identity = 54/172 (31.40%), Postives = 78/172 (45.35%), Query Frame = 2
Query:   71 SRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            SR  +P    P+ S++ E   ER ++        +G+VG P+VGKSTL + ++       ++ F T+ PN   V   D R           S V A     D+ GL+ GAHEG GLG+ FL HI     I HV+        +   +  DP  D   I+ EL   ++   ER
Sbjct:  127 SRFATPANPAPQLSENGEPGKERDVILELKVLADVGLVGFPSVGKSTLLSIVSSAKPKIADYHFTTLVPNLGVVETDDNR-----------SFVMA-----DLPGLIEGAHEGVGLGHQFLRHIERTRVIVHVID-------MSALEGRDPYEDYVTINEELEQYNMRLTER 275          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_SYNSC (GTPase obg OS=Synechococcus sp. (strain CC9605) GN=obg PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 58/187 (31.02%), Postives = 83/187 (44.39%), Query Frame = 2
Query:   98 PPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER-RIEDVEKSMKRSNDKQLKIEHEL 655
            P K ++ +E   E P+        ++GI+GLPN GKSTL   L+       ++PF T+ PN   V              +P      F    DI GL+ GA +G GLG+ FL HI     + H++ A           S DPV DL V+  EL       ++R R+  + K    S D   K++ EL
Sbjct:  138 PEKFTEGREGE-EWPLQLELKLLAEVGIIGLPNAGKSTLIAVLSAARPKIADYPFTTLVPNLGVVR-------------RPSGDGTVFA---DIPGLIEGAAQGSGLGHDFLRHIERTRLLIHLVDA----------GSEDPVADLNVVQQELEAYGHGLVDRPRLLVINKQELVSEDDLPKLQQEL 297          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_ROSCS (GTPase obg OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=obg PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 49/154 (31.82%), Postives = 69/154 (44.81%), Query Frame = 2
Query:  101 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRL 562
            P+ ++  E    R I         +G++G PN GKSTL + ++        +PF T++PN   V + +  F                  + DI GL+ GAH G GLG SFL HI     + H++      D   VD   DPV D   I+ ELRL
Sbjct:  141 PRIAELGEPGERREIELELKLLADVGLIGFPNAGKSTLLSVISAARPKIAPYPFTTLQPNLGVVEVGEYSFV-----------------VADIPGLIEGAHRGVGLGFSFLRHIERTRLLIHII------DAAGVDGR-DPVNDFSAINEELRL 270          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_RHOE4 (GTPase obg OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=obg PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 48/159 (30.19%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  107 ASKSKEAPA---------ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAEL 556
            ASK+++AP          ER ++    S   +G++G P+ GKS+L + L+       ++PF T+ PN   V+  D  F                  + D+ GL+ GA EG+GLG  FL HI     + HV+      D   +D   DP+ D++ + AEL
Sbjct:  131 ASKARKAPGFALLGEDGVERDLVLELKSVADVGLLGFPSAGKSSLVSVLSAAKPKIADYPFTTLVPNLGVVSSGDTTF-----------------TVADVPGLIPGASEGRGLGLDFLRHIERCAVLAHVI------DCATLDPGRDPISDIDALEAEL 266          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_LEPCP (GTPase obg OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=obg PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 44/139 (31.65%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  173 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI-PDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            +G++G+PN GKSTL   ++       ++PF T+ PN   V + P + F                  + DI GL+ GA EG GLG+ FL H++    + H++      D+   DD+VDPV   + I  EL+  D    E+
Sbjct:  162 VGLLGMPNAGKSTLIAAISNARPKIADYPFTTLHPNLGVVRVGPSQSF-----------------VVADIPGLIEGASEGAGLGHRFLRHLQRTRVLLHMI------DMAPFDDNVDPVAQAKAIVKELKKYDPALYEK 277          
BLAST of CK933175 vs. ExPASy Swiss-Prot
Match: OBG_GEOTN (GTPase obg OS=Geobacillus thermodenitrificans (strain NG80-2) GN=obg PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 57/175 (32.57%), Postives = 83/175 (47.43%), Query Frame = 2
Query:   62 TRRSRALSPKLMPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVGGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 586
            TR + A +P    P+ +++ E   ER ++        +G+VG P+VGKSTL + ++        + F T+ PN   V   D R           S V A     D+ GL+ GAHEG GLG+ FL HI     I HV+      D+  V+   DP  D  VI+ EL+  ++   ER
Sbjct:  127 TRFATAANPA---PEIAENGEPGEERNVILELKLLADVGLVGFPSVGKSTLLSVVSAARPKIAEYHFTTLVPNLGVVETEDGR-----------SFVMA-----DLPGLIEGAHEGVGLGHQFLRHIERTRVIVHVI------DMAAVEGR-DPYDDYVVINEELKQYNLRLTER 275          
The following BLAST results are available for this feature:
BLAST of CK933175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 306
Match NameE-valueIdentityDescription
OBG_RALSO1.023e-1230.94GTPase obg OS=Ralstonia solanacearum GN=obg PE=3 S... [more]
OBG_METFK1.023e-1233.33GTPase obg OS=Methylobacillus flagellatus (strain ... [more]
OBG_GEOSF1.023e-1231.90GTPase obg OS=Geobacter sp. (strain FRC-32) GN=obg... [more]
OBG_BREBN1.023e-1230.05GTPase obg OS=Brevibacillus brevis (strain 47 / JC... [more]
OBG_BACP21.023e-1231.40GTPase obg OS=Bacillus pumilus (strain SAFR-032) G... [more]
OBG_SYNSC1.746e-1231.02GTPase obg OS=Synechococcus sp. (strain CC9605) GN... [more]
OBG_ROSCS1.746e-1231.82GTPase obg OS=Roseiflexus castenholzii (strain DSM... [more]
OBG_RHOE41.746e-1230.19GTPase obg OS=Rhodococcus erythropolis (strain PR4... [more]
OBG_LEPCP1.746e-1231.65GTPase obg OS=Leptothrix cholodnii (strain ATCC 51... [more]
OBG_GEOTN1.746e-1232.57GTPase obg OS=Geobacillus thermodenitrificans (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004289_G01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933175 ID=CK933175; Name=CK933175; organism=Citrus sinensis; type=EST; length=890bp
GGGGAGACGCAGACTCAGACTCAGACTCGCATCTTACTTACTCAGTCTGC
AAAACCCTAGGACTAGAAGAAGTAGAGCTCTCTCTCCGAAACTAATGCCG
CCAAAAGCTTCAAAATCCAAAGAAGCGCCAGCTGAGCGCCCCATCCTAGG
CCGATTCTCTTCTCATCTCAAGATTGGCATTGTTGGATTGCCAAATGTTG
GCAAATCTACACTTTTCAACACGCTCACTAAGTTAGCAATACCCGCCGAG
AATTTCCCTTTTTGCACCATCGAGCCCAATGAAGCTCGGGTTAATATCCC
TGATGAGCGATTTGAGTGGCTTTGCCAGTTGTTCAAGCCAAAAAGCGCGG
TTCCAGCTTTCCTGGAGATCCATGATATAGCTGGACTAGTTAGAGGAGCC
CATGAAGGACAAGGTTTGGGCAACAGTTTCTTATCTCACATCCGTGCGGT
TGGCGGAATTTTTCATGTTCTACGTGCATTTGAAGATCCCGACATTATCC
ATGTTGATGACTCTGTCGATCCTGTGAGGGATTTAGAGGTTATAAGTGCA
GAATTACGGCTAAAGGATATTGAATTCATGGAAAGGAGGATTGAAGATGT
TGAGAAGAGCATGAAGAGGAGCAATGACAAACAGTTAAAAATAGAGCATG
AGTTGTGTCAAAGGGTTAAGGCCTGGCTTCAGGATGGAAAAGACGTCCGC
CTTGGGGATTGGAAAGCCGCTGACATTGAGATACTGAATACTTTTCAATT
GCTTACTGCCAAGCCTGTAGTTTACTTGGTTAACATGAATGAGAAGGATT
ACCAAAGAAAGAAAAACAAGTTCTTGCCCAAGATTCACGCTTGGGTTCAA
GAGCATGGGGGCGAACAAATTATTCCTTTCAGTTGTGCGT
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