CK933176
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18 Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 1 Query: 64 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 291 + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T DY I+ S LHLVL LRGG Sbjct: 1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17 Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1 Query: 64 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 291 M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP QR+++ GKQL D T YN+++ S LHLVL LRGG Sbjct: 1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17 Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1 Query: 292 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 447 IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+Q+RPKK +K Sbjct: 1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.728e-17 Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1 Query: 64 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 294 M I VKTLTGK I ++++ +D I +K ++++KEGIPP QQRLIF GKQ+ D + ++Y+I+ S LHLVL LRGG+ Sbjct: 1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17 Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1 Query: 292 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 447 IIEPSL LA KYN +K ICRKCYARL PRA NCRKKKCGH++QLRPKKK K Sbjct: 1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1 Query: 292 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 447 IIEPSL LA+KYN DK ICRKCYARL PRA NCRKKKCGHS++LR KKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17 Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1 Query: 64 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 291 M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15 Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 Query: 64 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 291 M + VKTLTGK I++E++ SD + ++K +++KEGIPP QQRLIF GKQ++D T+ D ++ + LHLVL LRGG Sbjct: 1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14 Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 292 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNQLRPKKKIK 447 IIEPSL ALA K+N DKMICRKCY ARL PRA NCRK+KCGH+N +RPKKK+K Sbjct: 1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72
BLAST of CK933176 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14 Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 1 Query: 295 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 447 +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K Sbjct: 2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52 The following BLAST results are available for this feature:
BLAST of CK933176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 125
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933176 ID=CK933176; Name=CK933176; organism=Citrus sinensis; type=EST; length=736bpback to top |