CK933186

Overview
NameCK933186
Unique NameCK933186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5456 contig Csv1_Contig5456:1..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933186 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.865e-39
Identity = 87/194 (44.85%), Postives = 119/194 (61.34%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----ITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N ++ N HF+KHW   +KTWF+QP                I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIGI+VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P    IT ++P     +VT   +  + +  LR ERA++++ G R
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPR----QVTDAERKVEIFRLLRKERADKKYRGKR 195          
BLAST of CK933186 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.526e-35
Identity = 81/170 (47.65%), Postives = 105/170 (61.76%), Query Frame = 2
Query:  149 FNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            FNQP                I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IGISVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P T          +T + +  K +D+LR  RA++R  G R
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKR 171          
BLAST of CK933186 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.099e-28
Identity = 78/190 (41.05%), Postives = 101/190 (53.16%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N  I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CK933186 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.435e-28
Identity = 74/183 (40.44%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  104 NGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITL---EKPTVDLVKVTQDMKSFKAYDKLRIERANER 643
            N HF+KHWQ  V+  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIGISVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P     L   E P     +  +  ++ K Y  +R +RA E+
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQPAPESGLRAVEVPEQTAYRTLRLARNEKKYKGIREKRAKEK 192          
BLAST of CK933186 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.874e-28
Identity = 78/190 (41.05%), Postives = 101/190 (53.16%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N  I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CK933186 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.452e-28
Identity = 75/183 (40.98%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  110 HFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            HF+KHWQ  VK  FNQ                 I PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIGI+VDHRR+N++ E  + NVQRLK Y++K++VFPR  +        PE      QV        + +P V+            AY  LR+ R+ +R+ G R
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE----TEQVLSTAAAFPIAQPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
The following BLAST results are available for this feature:
BLAST of CK933186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL6.865e-3944.8560S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_LUMRU3.526e-3547.6560S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13A_YEAST1.099e-2841.0560S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13_CANAL1.435e-2840.4460S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13B_YEAST1.874e-2841.0560S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13_SACEX5.452e-2840.9860S ribosomal protein L13 OS=Saccharomyces exiguus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004289_F04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933186 ID=CK933186; Name=CK933186; organism=Citrus sinensis; type=EST; length=792bp
GGGGGTTCGTTTCGGCTTTGCTGCCGTCGAGACTGAGAGAAACGGAGATA
GTCTTCTGCATTTCGCTCTGTAAACAAAAATGAAGCACAACAATGTAATT
CCAAATGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTT
TAACCAACCGGCTCGCAAAAATCGACGACGAGTTGCTCGTCAAAAGAAGG
CCGTTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCCCCGTCGTT
CATGGCCAGACTTTGAAATATAACATGAAATTAAGGGCTGGCAGAGGCTT
TACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAA
CAATTGGCATTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGT
CTTCAATCTAATGTTCAGAGGCTGAAGACTTACAAGGCCAAGTTGGTTGT
TTTCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCTGCTCCTGAGG
AATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTACTCTT
GAGAAGCCTACTGTCGACCTTGTTAAGGTTACTCAAGATATGAAGTCCTT
CAAGGCTTATGACAAGCTCCGGATTGAGCGTGCGAACGAGCGCCATTTTG
GTGCCAGGTTGAAGAAGGCTGCAGAGGCTGAAAAGGAAGAGAAGAAGTAA
ACAAACTTGTTTAAGCAGCACATTGAGTGTGGCACTACATTTTACATTTC
AATTTTGAATCTTTTTGTTATAGTGATTTCAATCTCTTAGCT
back to top