CK933239

Overview
NameCK933239
Unique NameCK933239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.583e-49
Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 520
            E+TFIM+KPDGVQRGLVG+II RFE+KGF L  LK     +   EKHY DLS++PFF  L+ Y+ SGPVV M+WEG  VVKTGR ++GATNPA S PGTIRGD  I  GRNIIHGSD+VESA+KEIALWF +   + W  +   WIYE
Sbjct:    3 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 150          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 2.583e-49
Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 520
            E+TFIM+KPDGVQRGLVG+II RFE+KGF L  LK     +   EKHY DLS++PFF  L+ Y+ SGPVV M+WEG  VVKTGR ++GATNPA S PGTIRGD  I  GRNIIHGSD+VESA+KEIALWF +   + W  +   WIYE
Sbjct:    6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDK3_ARATH (Nucleoside diphosphate kinase III, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDPK3 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.583e-49
Identity = 92/173 (53.18%), Postives = 126/173 (72.83%), Query Frame = 2
Query:    2 GILSHVCCAISLNSQNKLVSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 517
            G+L+    A  +  Q  L +    EME+TFI IKPDGVQRGL+ EII RFE+KGF L G+K++   + FA+KHY DL  +PFF  L ++++SGPV+AM+WEG+GV++ GR +IGAT+P +S PGTIRGDLA+  GRNIIHGSD  E+A+ EI+LWF P   +++ S+   W+Y
Sbjct:   67 GLLALPAAAYMIQDQEVLAA----EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVIVPSKDFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIRGDLAVTVGRNIIHGSDGPETAKDEISLWFKPQELVSYTSNSEKWLY 235          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.583e-49
Identity = 91/153 (59.48%), Postives = 119/153 (77.78%), Query Frame = 2
Query:   65 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 520
            +++++E+T+IMIKPDGVQRGLVGEII RFEKKGF L GLK+    +  AE+HY+DL +K F+  LI+YITSGPVV M WEG GVV + R +IGAT+P Q+ PGTIRGDLA+ TGRN++HGSDS ++ ++EI LWF +G I  W  +  PW+ E
Sbjct:   81 SMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.374e-49
Identity = 93/152 (61.18%), Postives = 112/152 (73.68%), Query Frame = 2
Query:   68 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 520
            +   EQTFI +KPDGVQRGLVG II RFE +GF L  +KL    +   EKHYEDL++KPFF  LI+Y+ SGP+ AM+WEG+  VKTGRTI+GATNP  SAPGTIRGD A+  GRN+ HGSDSVE+A+KEIALWF    +N W      WI+E
Sbjct:    1 MSNQEQTFIAVKPDGVQRGLVGNIISRFENRGFKLVAMKLTQPGQAHLEKHYEDLNTKPFFAGLIKYMNSGPICAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFALDMGRNVCHGSDSVENAKKEIALWFKPEELNQWNHHSAAWIFE 152          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.374e-49
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 2
Query:   68 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 520
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  I+++S  H W+YE
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFKPEELIDYKSCAHDWVYE 152          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKA1_BOVIN (Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 3.374e-49
Identity = 94/148 (63.51%), Postives = 112/148 (75.68%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 520
            E+TFI IKPDGVQRGL+GEII RFE+KGF L  +K M       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEIALWF P+  +N++S    WIYE
Sbjct:    5 ERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIYE 152          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKA_PONAB (Nucleoside diphosphate kinase A OS=Pongo abelii GN=NME1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.406e-49
Identity = 95/148 (64.19%), Postives = 111/148 (75.00%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 520
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  +++ S    WIYE
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKA_HUMAN (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.406e-49
Identity = 95/148 (64.19%), Postives = 111/148 (75.00%), Query Frame = 2
Query:   80 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 520
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK M       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  +++ S    WIYE
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152          
BLAST of CK933239 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.754e-49
Identity = 93/152 (61.18%), Postives = 114/152 (75.00%), Query Frame = 2
Query:   68 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 520
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI LWF P+  I+++S  H W+YE
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIHLWFKPEELIDYKSCAHDWVYE 152          
The following BLAST results are available for this feature:
BLAST of CK933239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA_DROYA2.583e-4963.51Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME2.583e-4963.51Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDK3_ARATH2.583e-4953.18Nucleoside diphosphate kinase III, chloroplastic/m... [more]
NDK2_SPIOL2.583e-4959.48Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_NEUCR3.374e-4961.18Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDKB_RAT3.374e-4961.18Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKA1_BOVIN3.374e-4963.51Nucleoside diphosphate kinase A 1 OS=Bos taurus GN... [more]
NDKA_PONAB4.406e-4964.19Nucleoside diphosphate kinase A OS=Pongo abelii GN... [more]
NDKA_HUMAN4.406e-4964.19Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
NDKB_MOUSE5.754e-4961.18Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_G10 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933239 ID=CK933239; Name=CK933239; organism=Citrus sinensis; type=EST; length=802bp
GGGGATTCTCTCGCATGTGTGCTGTGCTATTTCACTCAATTCTCAAAACA
AGTTGGTTTCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATC
AAGCCCGATGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATT
TGAGAAGAAGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACC
GCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTT
GGTTCTCTGATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTG
GGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCA
ACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTG
ACGGGCAGGAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAA
AGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCC
TTCACCCTTGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATT
GTTCCTGCAGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTAT
GGTTACTCCTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGAC
CAATCCTGGTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAAT
ATTTAAGCTTTTTTGTTGACTGTATTATGAATTGAGTTTGTTAATGGTTA
GCACATGATGGTTGCACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
back to top