CK933273

Overview
NameCK933273
Unique NameCK933273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.138e-21
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 535
            KP++ + K+ L  EL+L+GEYGLR K+ELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARAHLKWIVRRARSLLSMTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_PYRAR (30S ribosomal protein S4P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.792e-21
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  131 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 535
            KP++ + K+ L  EL+L+GEYGLR KRELW  +  L  I   AR LL  T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR LI   HI +  + V  P F+V
Sbjct:   15 KPKKIWNKQLLLEELQLMGEYGLRNKRELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKAGFIEDPNVPLDRILSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAIEGRRVTSPGFLV 147          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.386e-20
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = 2
Query:  107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            R  GK +  P  P+  ER+ +E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L + + LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQSEREISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            R  GK +  P  P+  ER+ +E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L ES+  LD+VL+L + + LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQSEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            R  GK +  P  P+  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD++L+L + + LERRLQTLV++ G+AK+   AR LI   HI V  + V  PS++V V     I +   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEREISHKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_NITMS (30S ribosomal protein S4P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.265e-20
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS 568
            + ++KP+RP   E    EL+ +G +GLR KRELW+    LSR+R+ AR LL L  +   R  +   L++ + R G L  S   LD VL LT  + L RRLQT+V K    K+ + AR  +   HI +G + V+IPS+ V V+ +  I F+
Sbjct:    9 RVWRKPKRPLNYELKMEELKTLGTFGLRTKRELWKAHTELSRVRHQARSLLAL--RQEVRAEKEPILMKSLARIG-LVSSDATLDDVLNLTANDLLSRRLQTIVTKKLGFKTPYQARQAVIHGHIMIGERKVDIPSYTVTVEEENSIHFA 155          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = 2
Query:  107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            R  GK +  P  P+  ER+  E  +  +YGL  K+ELW+++  L   R  AR L++  +   +   E   L   + RY  L E +  LD+VL+L + + LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:    5 RRLGKKYDTPNHPWIGERIQKEKEISQKYGLVNKKELWKMETQLRNYRRQARKLIS--DTTTQGGKEAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_HALSA (30S ribosomal protein S4P OS=Halobacterium salinarium GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 577
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_HALS3 (30S ribosomal protein S4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 58/153 (37.91%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTS 577
            K ++ P  PY+ ER+  E  L+  YGL+ K ELWR Q  L   R  AR LL            GE  + R+ R G L E + +LD VL+L V + LERRLQT+V++ G+A ++  AR  +   H+ V    V  PS+ V V  +  + F  TS
Sbjct:    9 KFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAFDETS 155          
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.173e-19
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 2
Query:  119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580
            + ++ P  P++K+RL  E RL+ EYGL+ KRELW  +    + R  AR L            E E  L ++ + G L E+  +LD VL LTV + LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:    6 RKWEGPSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
The following BLAST results are available for this feature:
BLAST of CK933273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_THENV2.138e-2143.8030S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_PYRAR2.792e-2143.0730S ribosomal protein S4P OS=Pyrobaculum arsenatic... [more]
RS4_METM71.386e-2036.7130S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM51.810e-2036.0830S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METVS4.032e-2036.0830S ribosomal protein S4P OS=Methanococcus vanniel... [more]
RS4_NITMS5.265e-2039.3330S ribosomal protein S4P OS=Nitrosopumilus mariti... [more]
RS4_METMP8.981e-2035.4430S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_HALSA8.981e-2037.9130S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_HALS38.981e-2037.9130S ribosomal protein S4P OS=Halobacterium salinar... [more]
RS4_NANEQ1.173e-1938.3130S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_D09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933273 ID=CK933273; Name=CK933273; organism=Citrus sinensis; type=EST; length=769bp
GGGGGCCTCTTCACGCCGTTTGCTTAGGCTTTTACAAAGATCGCACAGGG
GGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCACGTTTCA
TTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGA
GAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATGGGCTTC
GCTGCAAGAGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGA
AATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTAT
TTTTGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTTCTTGG
AAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGGGAAC
TTTCTTGAGCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAA
GTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTG
GAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAG
AAGCACATTGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGG
AAGAGTGAAGAGAAGGAACATTAGGGCTGCTGCCAAGAAGGCCGCAGGTG
GAGATGGAGATGAAGAGGATGAAGAATAAATTACCTTGTGTGAGCAGATA
GTTGTTTTATGGTTACAGTAGGAACTCTGGCTGAANNNNGCAAATCGACT
TATCTTCTCTTAAGTTATA
back to top