CK933273
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.889e-18 Identity = 57/155 (36.77%), Postives = 83/155 (53.55%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580 K ++ P P++ ER+ E L+ YGL K ELWR Q L R AR L+ + + E G L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+ + AR I H+ V V+ PS+ V V + IEF TSP Sbjct: 8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_UNCMA (30S ribosomal protein S4P OS=Uncultured methanogenic archaeon RC-I GN=rps4p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.436e-18 Identity = 51/159 (32.08%), Postives = 89/159 (55.97%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE-----KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580 K + P P++K R+D E LV +YGLR K+ +W+ L + R+ AR LL + ++ I + + +++++ G L+E KL+ VLAL V + +ERRLQT++++ G A SI AR I HI + + + +P ++V + + + + SP Sbjct: 9 KLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVKKLQTLGILKEDA-KLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17 Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 2 Query: 119 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEF 565 K + P P+ +R+ E RL +YGL+ K+E+W+ + + R R AR +L +D R + + LL + R GF+ + KL+ VL L V + L RRLQ+LVFK G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
BLAST of CK933273 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17 Identity = 56/158 (35.44%), Postives = 84/158 (53.16%), Query Frame = 2 Query: 107 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVGNFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 580 R K + P P+ ER+ E +L+ +YGL+ K+E+W+ + R AR LL D + E LL + R G L E L+ VL LTV + L RRLQT+V+K G+A++ AR+ + HI + + +N PS+VV + I F +SP Sbjct: 5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159 The following BLAST results are available for this feature:
BLAST of CK933273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933273 ID=CK933273; Name=CK933273; organism=Citrus sinensis; type=EST; length=769bpback to top |