CK933309

Overview
NameCK933309
Unique NameCK933309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  196 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVD        + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  196 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVD        + V ++PT +  K+G++V+ ++G + KEEL + I K++
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 31/86 (36.05%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 450
            V+VDF A WCGPCR ++P + E+A++   ++  +K++ D   ++A ++ + ++PT M  K G+ VD V+GA  K  L  T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYIS 107          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 30/86 (34.88%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAELAKKL-PNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 450
            V+VDF A WCGPCR ++P +  +A++   ++  +K++ D   ++A ++ + ++PT M  K G+ VD V+GA  K  L+ T+ K+++
Sbjct:   22 VLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYIS 107          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO3_DICDI (Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  160 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 447
            NE+L K  +  Q VVVDF+A WCGPCR IAP   +L+ +     F+ VD+D + +      + ++PTF F   G  V +  GA +  L+ T+  ++
Sbjct:   10 NEELDKYLQ-HQRVVVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNGAKVSEFSGANEATLRSTLEANI 104          
The following BLAST results are available for this feature:
BLAST of CK933309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
THIO_LISMO2.830e-1138.37Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN2.830e-1138.37Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_PORYE3.697e-1136.05Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_PORPU6.305e-1134.88Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO3_DICDI8.235e-1136.46Thioredoxin-3 OS=Dictyostelium discoideum GN=trxC ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933309 ID=CK933309; Name=CK933309; organism=Citrus sinensis; type=EST; length=691bp
GGGGAAAGAAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAG
AGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAG
CAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTT
GAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGT
TGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTC
CTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAG
GTTGATGTGGATGGACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGC
CATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGG
TTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCA
ACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAG
AGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAG
TGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACT
GTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTT
GTTGTTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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