CK933309

Overview
NameCK933309
Unique NameCK933309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA +  V+ MPTF F K+G+ VD+  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  151 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 441
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD  + VA D  V+ MPTF F K+G+ V +  GA KE+L+ TI +
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITE 103          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.824e-19
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + E  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALNSAGE--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  151 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKH 444
            EA+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L  K  NV+FL+VDVD  + VA D  V+ MPTF F K+G+ V +  GA KE+L+ +I ++
Sbjct:    9 EAFQEALAAAGD--KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.688e-19
Identity = 46/95 (48.42%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  151 EAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            +A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:    9 DAFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.817e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDAAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.291e-19
Identity = 46/94 (48.94%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+FL+VDVD  + VA++  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEALDDAGD--KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  154 AWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            A+ E L  + +  +LVVVDF+A+WCGPC+ I PF   L++K  NV+F++VDVD  K +A +  V+ MPTF F K+G+ V +  GA KE+L+ TI
Sbjct:   10 AFQEVLDSAGD--KLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101          
The following BLAST results are available for this feature:
BLAST of CK933309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
THIO_HORSE4.357e-2051.06Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP2.162e-1950.00Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_RAT2.162e-1949.48Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_PIG2.162e-1950.00Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_BOVIN2.824e-1950.00Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE3.688e-1947.96Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_CALJA3.688e-1948.42Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN4.817e-1948.94Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_MACMU6.291e-1948.94Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_RABIT8.216e-1947.87Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933309 ID=CK933309; Name=CK933309; organism=Citrus sinensis; type=EST; length=691bp
GGGGAAAGAAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAG
AGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAG
CAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTT
GAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGT
TGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTC
CTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAG
GTTGATGTGGATGGACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGC
CATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGG
TTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCA
ACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAG
AGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAG
TGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACT
GTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTT
GTTGTTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top