CK933309

Overview
NameCK933309
Unique NameCK933309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  100 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 441
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD +  + +  D  +  +PTF F K  + V +  GA   +L+++I++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  187 TKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIV 390
            T Q VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  187 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 447
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ D   S++ ++ + ++PT M  K+GK VD V+GA  K  L   + K+L
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  196 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKH 444
            LV+VDF A WCGPCR + P L  LA +LP+V   K+++D     A  + V ++PT +  K+G  V +VVG K KE L   I KH
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  163 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVD  + VA  + V AMPT +  K G  +  VVGA +  +++ I
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELI 103          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-GLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D +   K +A +  +  +PTF  LK GKIVD+V GAK ++L   I
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAI 185          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 447
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ D    VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 447
            V+VDF A WCGPCR +AP + E+A++    +  +KV+ D    VA+ + + ++PT M  K G+ VD VVGA  K  L QT+ KHL
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + I KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 447
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D    +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
The following BLAST results are available for this feature:
BLAST of CK933309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TXND2_MOUSE3.950e-1335.96Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_NEUCR3.950e-1353.52Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO_CYACA3.950e-1340.45Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_CHLPN5.158e-1345.24Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
THIO_ECHGR6.737e-1339.56Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
TRXF_MESCR8.799e-1347.50Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO1_ANASP8.799e-1344.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO8.799e-1344.71Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_STAS11.149e-1248.81Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIOM_RAT1.149e-1242.86Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004287_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933309 ID=CK933309; Name=CK933309; organism=Citrus sinensis; type=EST; length=691bp
GGGGAAAGAAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAG
AGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAG
CAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTT
GAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGT
TGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTC
CTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAG
GTTGATGTGGATGGACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGC
CATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGG
TTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCA
ACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAG
AGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAG
TGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACT
GTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTT
GTTGTTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top