CK933309

Overview
NameCK933309
Unique NameCK933309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 447
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D    +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  199 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHL 447
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D    +A ++ V A+PT + +K G +VDK VG K E+  +   K L
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 164          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  202 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQTIAKHL 447
            +VDF A+WCGPC+ IAP L ELA         LK+DVD   S A  + V ++PT +  K+G+ VDKVVG + KE L + + KHL
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of CK933309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
THIOM_MOUSE1.149e-1242.86Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN1.149e-1242.86Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_STAAW1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU1.501e-1247.62Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB1.501e-1247.62Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933309 ID=CK933309; Name=CK933309; organism=Citrus sinensis; type=EST; length=691bp
GGGGAAAGAAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAG
AGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAG
CAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTT
GAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGT
TGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTC
CTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAG
GTTGATGTGGATGGACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGC
CATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGG
TTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCA
ACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAG
AGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAG
TGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACT
GTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTT
GTTGTTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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