CK933309

Overview
NameCK933309
Unique NameCK933309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/82 (41.46%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  193 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-GLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTI 435
            ++VV+D    WCGPC+ IAP   EL++K  +++FLK+D +   K +A +  +  +PTF  LK+ K+V +V GAK E+L   I
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAI 179          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 32/93 (34.41%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  181 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 459
            N  K L VV F A W   C  +   +AELAK+ P V+F+K++ + +  V+  + V ++PTF+F K  + +D++ GA   EL + + +H ++ S
Sbjct:   19 NSAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHASSTS 111          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  190 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-GLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 459
            ++LVV+D    WCGPC+ IAP    L++K  +V+FLK+D +   + +A +  +  +PTF  LK+ K+V +V GAK ++L   I    + AS
Sbjct:   87 EKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSAAS 177          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 32/89 (35.96%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  181 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAK 441
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V A    L+++I +
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKSIVE 134          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  187 TKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 447
            ++Q V+VDF A WCGPCR IA  + E+A    + L  +KV+ D   ++AT++ + ++PT M    GK VD VVGA  K  L  T+ KHL
Sbjct:   18 SRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHL 106          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  112 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 447
            A  E QV+      +W+E L   +ET   V+VDF A WCGPCR IAP + ELAK+    +   K++ D   + AT + + ++PT +F K G+  D V+GA  K  L + + K++
Sbjct:   65 AVNEVQVVND---SSWDE-LVIGSETP--VLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  184 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 459
            +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ S
Sbjct:   31 KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGS 122          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 38/120 (31.67%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  112 AAEEGQ----VIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQTIAKHLATAS 459
            AAE G+    V+   + + + E L+   +TK L+VV F A W   C  +   +AELAK+ P+V F+K++ + +  V+  + + ++PTF+F K  + VD++ GA   EL + + +H+++ +
Sbjct:    5 AAEAGEAAVAVVEVGSAQQFEELLRL--KTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGA 122          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   91 PRKAEMAAAEEGQVIGCHTVEAWNEQLQKSN--ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHL 447
            PR++ +  AE G V         N+   K+   E+   V+VDF A WCGPCR IAP + E+A +  + L  +K++ D   +VA+++ + ++PT M  K GK  + ++GA  K  + QT+ K+L
Sbjct:   26 PRRSVVVRAEAGAV---------NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139          
BLAST of CK933309 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  184 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDGLKSVATDWAVEAMPTFMFLKEGKIVDKVVGA-KKEELQQTIAKHLA 450
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ D    +AT + + ++PT +F K G+  + ++GA  K  L  +I K+L+
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 180          
The following BLAST results are available for this feature:
BLAST of CK933309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TRXF2_ARATH5.703e-1241.46Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
GLRX3_XENTR9.728e-1234.41Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
TRXF1_ARATH1.271e-1138.46Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TR548_MIMIV1.271e-1135.96Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
THIO_GRIPA1.271e-1143.82Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
TRXM_PEA1.659e-1137.72Thioredoxin M-type, chloroplastic OS=Pisum sativum... [more]
GLRX3_RAT1.659e-1134.78Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
GLRX3_MOUSE1.659e-1131.67Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
TRXM_CHLRE2.167e-1134.96Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
TRXM_SPIOL2.830e-1137.36Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004287_A09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933309 ID=CK933309; Name=CK933309; organism=Citrus sinensis; type=EST; length=691bp
GGGGAAAGAAACCCCATACGCAAATCACCAAGAGCAAGAAAGCGAGGGAG
AGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAG
CAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTT
GAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGT
TGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTCATTGCTC
CTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTTTCTGAAG
GTTGATGTGGATGGACTGAAGAGTGTTGCCACTGACTGGGCAGTGGAGGC
CATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGACAAGGTGG
TTGGAGCAAAGAAAGAGGAACTGCAGCAGACTATTGCCAAGCATCTGGCA
ACTGCTTCTGCCTAATAAGTTATAACTATCCTCCTGCCTTTTGGCTTTAG
AGGCTATAGACCTCAATATATGCTATCAGTCTGTAATTTACTTATTAGAG
TGGTTATGGGATTGTGTTTGTTTGTGTGTTTGAATATTCCGTAATTTACT
GTTCTATGAAGCTCATACTGTGGTCTTTACAATAATTTAATTTCATATTT
GTTGTTGAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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