CK933373

Overview
NameCK933373
Unique NameCK933373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_THEAC (Dihydroorotate dehydrogenase OS=Thermoplasma acidophilum GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.619e-13
Identity = 55/198 (27.78%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  261 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWE----NIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVA 842
            DLS +V G+++ NP ++ SG    N   M    + G  AVV K++ ++                  NG +   I+ +     N   +S+  ++   +E +  K     + +I S+    +  ++  L  +++E G DA+E+N SCPH    +  G  VG D  L+E++   + +K +VPV+AK++PN++DI E A+ A
Sbjct:    3 DLSTSVAGIRLENPLMLASGILDENGYTMLDVMNNGAAAVVTKSIGMEER----------------NGYSAPVIVEYGDSLINAVGLSNPGIDNFAEEIRIAKR--SGKPVIGSVFAS-DAESFVNLGRKMQEYGCDAVELNLSCPH---VKGFGLEVGSDPDLVEDIVNEMKSKISVPVFAKLSPNVSDIIEIAKAA 178          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_PYRFU (Dihydroorotate dehydrogenase OS=Pyrococcus furiosus GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 58/210 (27.62%), Postives = 98/210 (46.67%), Query Frame = 3
Query:  264 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            + I + G+   NP ++ SG       +++RA  EG G VV K++ ++  K  +  P    +  G   +      GW+             L+EF++    +P   +I SI    N   +  L +++E  G DA E+N SCPH    +  G  +GQD   +  V   +      PV AK+TPN +DIT+    A ++ ++G S  NT+ ++
Sbjct:    3 IKIELFGITFENPLILASGVVDMTPELLRRAHKEGAGGVVTKSIGIEPRKGYD-NPTVVEVPCGLINAMGLPNPGWK-----------AFLEEFEKESFDFP---VIVSIFGG-NPEEFAFLAEKLERVG-DAFELNLSCPHA---KGYGLEIGQDPENVYRVVKAVKDVTDKPVIAKLTPNTSDITKLGLAAEKAEADGVSAINTLKAI 192          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSF (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain FRC-32) GN=pyrD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = 3
Query:  252 AEPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            A+PDLS+ ++G+++ NP +  SG  G           E  GA++ K +SL   K  N TPR      G   +   Q +G +    I ++       +   +  LY       + +EEY + A  E +DR+ E  +  +EVN SCP+    ++ G   G D     EV G +    + P+  K++PN+TD+   A   + +G++  S  NT+
Sbjct:    2 AKPDLSVEISGIKLRNPVMTASGTFGYGKEFSDYLDLEKIGAIITKGLSL-RPKAGNPTPRIVETPGGMLNAIGLQNVGID--AFIGEKLPFLRTVDTPVIVNLY------GNTLEEYGELA--EKLDRLPE--VAGLEVNISCPN---VKQGGIVFGTDPNAAAEVVGLVRRSTSKPLIIKLSPNVTDVVRMADACVNAGADALSLINTL 196          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_LACH4 (Dihydroorotate dehydrogenase OS=Lactobacillus helveticus (strain DPC 4571) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.344e-12
Identity = 57/210 (27.14%), Postives = 105/210 (50.00%), Query Frame = 3
Query:  270 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            + + GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++  +L+  YPD  ++AS+  + ++  + E+  ++  +G ++A+E+N SCP+     + G + G    ++EE+   I     +P++ K+TPN+TDI E A+ A   G++G S  NT++ +
Sbjct:    6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTTPHATTG-NPQPQIAILEDGVLNS----------VGLTNPGVDQVISEKLTKLRHQYPDLPIMASVGGD-SEDDYVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYVKLTPNVTDIVEIAKAAESGGADGISMINTLLGM 200          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_ANATD (Dihydroorotate dehydrogenase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=pyrD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12
Identity = 61/213 (28.64%), Postives = 106/213 (49.77%), Query Frame = 3
Query:  261 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            +L + + G+++ NP +  SG  G      K      +GA+  K ++L   ++ N  PR   + AG   S     +G EN  +E   +  L   LK F        D  +IA+I   ++K  + EL  ++  + +D IEVN SCP+    ++ G   G+D + + E+   +   A+ P+  K+TPN+TDIT+ A  A  +G++  S  NT+ ++
Sbjct:    2 NLEVEIAGIKLKNPVIAASGTFGFGREYSKLIDISEFGAICTKGITLKK-RIGNPQPRLCEVYAGIINS-----VGLENPGVEAFINDELP-FLKSF--------DTKIIANI-NGFSKEEFVELT-KILTSLVDMIEVNLSCPN---VKEGGMVFGKDPKKVYEITKSVKDVASCPIIVKLTPNVTDITQLAVAAENAGADAISLINTVSAM 194          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_GEOBB (Dihydroorotate dehydrogenase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.994e-12
Identity = 62/210 (29.52%), Postives = 100/210 (47.62%), Query Frame = 3
Query:  258 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            PD+S+ V G++M NP +  SG  G           E  GA+++K +SL   K  N TPR      G   +     IG +N+ +  D  +E  L   K +    P  + L  + +EEY + A    +D +  +G+  IEVN SCP+    ++ G   G D    +EV   +    T P+  K++PN+TD+   A+    +G++  S  NT+
Sbjct:    4 PDMSVAVAGIKMRNPVMTASGTFGYGAEFADYLDLECIGAMISKGLSLKP-KAGNPTPRIVETPGGMLNA-----IGLQNVGI--DAFIEQKLPYLKNVNT--PVIVNLYGNTLEEYGEVAAR--LDGL--SGVAGIEVNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTTKPMIVKLSPNVTDVVLMAKACADAGADALSLINTL 196          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_GEOSM (Dihydroorotate dehydrogenase OS=Geobacter sp. (strain M21) GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.911e-12
Identity = 61/210 (29.05%), Postives = 99/210 (47.14%), Query Frame = 3
Query:  258 PDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            PD+S+ V G++M NP +  SG  G           E  GA+++K +SL   K  N TPR      G   +     IG +N+ +  D  +E  L   K +    P  + L  + +EEY + A    +D +   G+  IEVN SCP+    ++ G   G D    +EV   +    + P+  K++PN+TD+   A+    +G++  S  NT+
Sbjct:    4 PDMSVAVAGIKMRNPVMTASGTFGYGAEFADYLDLESIGAMISKGLSLKP-KAGNPTPRIVETPGGMLNA-----IGLQNVGI--DAFIEQKLPYLKNVNT--PVIVNLYGNTLEEYGEVAAR--LDGL--AGVAGIEVNISCPN---VKQGGIVFGTDPGAAQEVVRLVKKNTSKPMIVKLSPNVTDVVVMAKACADAGADALSLINTL 196          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_ALKOO (Dihydroorotate dehydrogenase OS=Alkaliphilus oremlandii (strain OhILAs) GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.911e-12
Identity = 57/211 (27.01%), Postives = 101/211 (47.87%), Query Frame = 3
Query:  261 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            ++ + + G+Q+ NP +  SG  G+     +       GAVV K V+ +     N TPR A    G   S     +G +N        +E  +K+  Q    Y  +I++   +     A + ++ +++ +  ID IE+N SCP+    +  G   G +  ++EEV   +   A  P+  K+TPN+TDI E A+ A+  G++  S  NT++ +
Sbjct:    5 NMGVHIAGIQLKNPVMTASGTFGSGREYSEFVDLNQLGAVVVKGVANEPWSG-NPTPRIAETYGGMLNS-----VGLQN------PGVEAFIKDDIQFLRQYDTKIIVN--IAGRTVADYCKVTEKLGDADIDLIELNISCPN---VKAGGVNFGTNPAMVEEVTKAVKKVARQPLIVKLTPNVTDIVEIAKAAVAGGADAISLINTLLGM 198          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_CLOPH (Dihydroorotate dehydrogenase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pyrD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 59/208 (28.37%), Postives = 99/208 (47.60%), Query Frame = 3
Query:  267 SITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWEN--IELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            ++T+ G+   NP    SG  G+     +       GA+  K VS       N  PR A    G   +     IG +N  +++  +R L   LK+F        D  +I ++  +  K  + E+++R+ E  +D +E+N SCP+    ++   A GQD +++  +   I   A  PV  K++PN+TDITE A+ A   G++  S  NT+
Sbjct:    4 NVTIAGVTFKNPVTTASGTFGSGMEYSEFVDLNRLGAITTKGVS-SVPWPGNPVPRIAETYGGMLNA-----IGLQNPGVDMFVERDL-AFLKQF--------DTKVIVNVCGKSVKE-YVEVVERLSEEAVDLLELNISCPN---VKEGCIAFGQDPKMIAMIMDEIKRHAKQPVIVKLSPNVTDITEMAKAAEAGGADALSLINTL 192          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_METMA (Dihydroorotate dehydrogenase OS=Methanosarcina mazei GN=pyrD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.670e-12
Identity = 62/208 (29.81%), Postives = 93/208 (44.71%), Query Frame = 3
Query:  264 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGW-GAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            L  T+ GL++ NP ++ +G  GT    + R   EG  GAVV K++   A K  +  P    L  G           + N   + +      L+E +  K    D  +IASI      + + E+ + +     DA E+N SCPH       GAA+G +  L+E V   +     VPVW K+TPN+ DIT     A   G++     NT+
Sbjct:   13 LMYTLTGLKLKNPTILAAGVLGTTGASLCRVAREGGAGAVVTKSIG-PAPKTGHPNPSMIELDCG-----------FLNAMGLPNPSYPGFLQELEFAKE-NSDAPVIASIFGG-TPSEFAEVAEGLLPAKPDAFELNVSCPHA---EGYGAAIGSNPCLVEAVTAAVKDVVNVPVWVKLTPNVADITCIGNAAESGGADAVVAINTV 203          
The following BLAST results are available for this feature:
BLAST of CK933373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PYRD_THEAC4.619e-1327.78Dihydroorotate dehydrogenase OS=Thermoplasma acido... [more]
PYRD_PYRFU6.033e-1327.62Dihydroorotate dehydrogenase OS=Pyrococcus furiosu... [more]
PYRD_GEOSF6.033e-1327.96Dihydroorotate dehydrogenase OS=Geobacter sp. (str... [more]
PYRD_LACH41.344e-1227.14Dihydroorotate dehydrogenase OS=Lactobacillus helv... [more]
PYRD_ANATD2.293e-1228.64Dihydroorotate dehydrogenase OS=Anaerocellum therm... [more]
PYRD_GEOBB2.994e-1229.52Dihydroorotate dehydrogenase OS=Geobacter bemidjie... [more]
PYRD_GEOSM3.911e-1229.05Dihydroorotate dehydrogenase OS=Geobacter sp. (str... [more]
PYRD_ALKOO3.911e-1227.01Dihydroorotate dehydrogenase OS=Alkaliphilus oreml... [more]
PYRD_CLOPH5.107e-1228.37Dihydroorotate dehydrogenase OS=Clostridium phytof... [more]
PYRD_METMA6.670e-1229.81Dihydroorotate dehydrogenase OS=Methanosarcina maz... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_D06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933373 ID=CK933373; Name=CK933373; organism=Citrus sinensis; type=EST; length=893bp
GGGGGAGCTGTAGCTGTTATCGTAAATTATTATTAAGTCGAATTCATAAA
GCTTCTCTCTGATCCCAAAAGAATCTTTAGAACTGAGTGAGATTCAATCT
TGTTCATTTCCTTTTATCTCCATCCATGGCATCATTGAATTTGAATCAGA
TCATAAGCAACAGCAACACCTCCTTTGCTGTGAATCGTCGGCCAGGATTG
CGCTTGCCTAGTCGAATTGGGTTGAGGGTTTTGGCTTCTGCTTCAGCTTC
AGCAGAGCCAGACTTGAGTATTACAGTAAATGGACTGCAGATGCCGAACC
CGTTTGTTATCGGATCGGGTCCACCTGGCACCAACTACACTGTCATGAAG
CGAGCCTTTGATGAAGGCTGGGGTGCTGTTGTTGCTAAAACTGTATCATT
AGATGCAGCAAAAGTTATAAACGTAACTCCTCGATATGCCCGCCTGCGAG
CAGGTGCGAATGGATCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATA
GAACTCATTAGCGATCGGCCGCTTGAAACAATGTTGAAAGAATTTAAACA
ATTAAAAGCATTGTATCCGGATAGGATTCTCATTGCTTCAATTATGGAAG
AGTATAACAAAGCTGCATGGGAGGAGCTTATTGATCGAGTGGAAGAAACA
GGAATTGATGCAATAGAAGTTAATTTTTCATGTCCCCATGGCATGCCGGA
ACGTAAAATGGGGGCTGCTGTTGGCCAAGATTGTAGGCTATTGGAAGAAG
TTTGTGGTTGGATAAATGCAAAAGCTACTGTTCCTGTGTGGGCAAAGATG
ACTCCTAACATTACTGACATTACAGAGCCAGCTAGGGTGGCTCTCAGATC
AGGAAGTGAGGGAGCATCTGNNNTTAACACAATCATGAGCGTC
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