CK933373

Overview
NameCK933373
Unique NameCK933373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_LACAC (Dihydroorotate dehydrogenase OS=Lactobacillus acidophilus GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.138e-11
Identity = 57/210 (27.14%), Postives = 106/210 (50.48%), Query Frame = 3
Query:  270 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            IT+ GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++   L+  YP+  ++AS+  + +++ + E+  ++ ++  ++A+E+N SCP+     + G + G    ++EE+   I     VP++ K+TPN+TDI   A+ A + G++G S  NT++ +
Sbjct:    6 ITLPGLDLKNPVMPASGTFGFGDVPAAKKFDLNDLGAMVIKTTTPKATSG-NPQPQIAVLDDGVLNS----------VGLTNPGVDQVISEKLVPLRKQYPNLPIMASVGGD-SESDYVEVAKKLSDSDLVNALEINVSCPN---VAQGGMSFGVHPDVVEELTKKIKDVVDVPIYVKLTPNVTDIVAIAQAAEKGGADGISMINTVLGM 200          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_LACDB (Dihydroorotate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 56/210 (26.67%), Postives = 104/210 (49.52%), Query Frame = 3
Query:  270 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            + + GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++  +L+  Y D  ++AS+  + ++  + E+  ++  +G ++A+E+N SCP+     + G + G    ++EE+   I     +P++ K+TPN+TDI E A+ A   G++G S  NT++ +
Sbjct:    6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTTPHATTG-NPQPQIAILEDGVLNS----------VGLTNPGVDQVISEKLTKLRHQYIDLPIMASVGGD-SEDDYVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYVKLTPNVTDIVEIAKAAESGGADGISMINTVLGM 200          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_LACDA (Dihydroorotate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 56/210 (26.67%), Postives = 104/210 (49.52%), Query Frame = 3
Query:  270 ITVNGLQMPNPFVIGSGPPGTNYTVMKRAFD-EGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETG-IDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            + + GL + NP +  SG  G       + FD    GA+V KT +  A    N  P+ A L  G   S          + L +    + + ++  +L+  Y D  ++AS+  + ++  + E+  ++  +G ++A+E+N SCP+     + G + G    ++EE+   I     +P++ K+TPN+TDI E A+ A   G++G S  NT++ +
Sbjct:    6 VNLPGLDLKNPVMPASGTFGFGDVPAAQKFDLNDLGAMVIKTTTPHATTG-NPQPQIAILEDGVLNS----------VGLTNPGVDQVISEKLTKLRHQYLDLPIMASVGGD-SEDDYVEVAKKLSASGLVNALEINVSCPN---VAQGGMSFGVHAGVVEELTKKIKMAVALPIYVKLTPNVTDIVEIAKAAESGGADGISMINTVLGM 200          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_ALKMQ (Dihydroorotate dehydrogenase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pyrD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 57/214 (26.64%), Postives = 104/214 (48.60%), Query Frame = 3
Query:  261 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILI---ASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            ++ + + G+++ NP +  SG  G+     +       GAVV K V+ +  K  N +PR A    G   S     +G +N  +  D  +E  +   +Q    Y  +I++      +E+Y      E++ ++ +  +D +E+N SCP+    +  G   G D  ++EEV   +   A  P+  K+TPN+TDI   A+ A+  G++G S  NT++ +
Sbjct:    5 NMKVNIAGVELKNPVMTASGTFGSGREYGEYVDLNQLGAVVVKGVANEPWKG-NPSPRIAETYGGMLNS-----VGLQNPGV--DEFIEKDIPFLRQ----YNTKIIVNIAGRTIEDYC-----EVVKKLGDADVDLLELNISCPN---VKAGGVCFGTDPFMVEEVTKAVKKVAKQPLIVKLTPNVTDIVPIAKAAVAGGADGISLINTLLGM 198          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_GEOUR (Dihydroorotate dehydrogenase OS=Geobacter uraniireducens (strain Rf4) GN=pyrD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 58/211 (27.49%), Postives = 100/211 (47.39%), Query Frame = 3
Query:  255 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRI-LIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            +PDLS+ V G+++ NP +  SG  G           E  GA++ K +S+   K  N TPR      G   +     IG +N+ +  D  ++  L   + +    P  + L  + +EEY + A  E +D++ E  +  +EVN SCP+    ++ G   G D     EV   +      P+  K++PN+T++ E A   + +G++  S  NT+
Sbjct:    3 KPDLSVEVAGIKLRNPVMTASGTFGYGKEFADYLDLEKIGAIITKGLSI-RPKAGNPTPRIVETPGGMLNA-----IGLQNVGI--DAFIQEKLPFLRTVNT--PVIVNLYGNTLEEYGELA--EKLDKLPE--VAGLEVNISCPN---VKQGGIVFGTDPNAAYEVVSLVRESTIKPLIVKLSPNVTNVVEMANACVDAGADALSLINTL 196          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_DESAD (Dihydroorotate dehydrogenase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=pyrD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 64/209 (30.62%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  261 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEETGIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKA-TVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            D+SI   GL++ NP +  SG  G      +    E  G +V K +SL   +  N  PR A    G   +   Q  G E  E I+ +  +   K    L  LY      A+  EE+ + A         E G+ A+EVN SCP+    ++ G A GQD + + +V   +   A   P+  K++PN+TDIT  A+ A   G++  S  NT+
Sbjct:    2 DVSIDFAGLKLKNPILTASGTFGFGLEFQRYGDLESLGGIVVKGLSLKPREG-NPMPRIAETPCGMLNAIGIQNPGVE--EFINKKLPKLPWKTLPVLANLY------ATDAEEFGELAGV----LAGEEGVAALEVNVSCPN---VKEGGIAFGQDPKQITKVAEAVKKNAGNKPIIIKLSPNVTDITVCAKAAEDGGADALSLINTL 194          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_NATTJ (Dihydroorotate dehydrogenase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=pyrD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 60/209 (28.71%), Postives = 91/209 (43.54%), Query Frame = 3
Query:  261 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTI 884
            DL +   G+ M NP    SG  G  +           GA+V K ++L   +    T    RL   A+G      IG EN  +  D  +  +L + +Q  A     I         N   + E+  ++    GI  +EVN SCP+    R+ G   G D  L   +   +    + PV  K++PN+TDITE A+   R+G++G S  NT+
Sbjct:    3 DLKVNFAGIPMKNPVASASGTFGFGFEYQSVISPHELGALVVKGLTLSPKRGNQGT----RLHETASGLLNS--IGLENPGI--DNFINEILPDLRQCDATTLINI------SGGNDEEYVEITQKLNNCQGIAGLEVNISCPN---IREGGLVYGVDPELTYRLVSKVRQSTSFPVIVKLSPNVTDITEIAKACERAGADGLSLINTV 194          
BLAST of CK933373 vs. ExPASy Swiss-Prot
Match: PYRD_LISW6 (Dihydroorotate dehydrogenase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=pyrD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 58/211 (27.49%), Postives = 104/211 (49.29%), Query Frame = 3
Query:  264 LSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDRILIASIMEEYNKAAWEELIDRVEET-GIDAIEVNFSCPHGMPERKMGAAVGQDCRLLEEVCGWINAKATVPVWAKMTPNITDITEPARVALRSGSEGASXXNTIMSV 893
            L++ + GL + NP +  SG  G      K       GA++AK V+ +  ++ N TPR A   +G   +   Q  G E++ L  + P    L++F+      P    +A   E+     + E+  R+ E+  + AIE+N SCP+    +  G A G D  +   +   + + A+VPV+ K++PN+ DI   A+    +G++G +  NT++ +
Sbjct:    4 LAVEIPGLSLKNPIMPASGCFGFGQEYSKYYDLNKLGAIMAKAVTPEP-RLGNPTPRVAETASGMLNAIGLQNPGLEHV-LAHELPF---LEQFET-----PIIANVAGATED----DYVEVCSRIGESKAVKAIELNISCPN---VKHGGIAFGTDPEVAHRLTKAVKSVASVPVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLGM 197          
The following BLAST results are available for this feature:
BLAST of CK933373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PYRD_LACAC1.138e-1127.14Dihydroorotate dehydrogenase OS=Lactobacillus acid... [more]
PYRD_LACDB1.486e-1126.67Dihydroorotate dehydrogenase OS=Lactobacillus delb... [more]
PYRD_LACDA1.486e-1126.67Dihydroorotate dehydrogenase OS=Lactobacillus delb... [more]
PYRD_ALKMQ1.486e-1126.64Dihydroorotate dehydrogenase OS=Alkaliphilus metal... [more]
PYRD_GEOUR2.535e-1127.49Dihydroorotate dehydrogenase OS=Geobacter uraniire... [more]
PYRD_DESAD4.324e-1130.62Dihydroorotate dehydrogenase OS=Desulfovibrio sale... [more]
PYRD_NATTJ7.375e-1128.71Dihydroorotate dehydrogenase OS=Natranaerobius the... [more]
PYRD_LISW67.375e-1127.49Dihydroorotate dehydrogenase OS=Listeria welshimer... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_D06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933373 ID=CK933373; Name=CK933373; organism=Citrus sinensis; type=EST; length=893bp
GGGGGAGCTGTAGCTGTTATCGTAAATTATTATTAAGTCGAATTCATAAA
GCTTCTCTCTGATCCCAAAAGAATCTTTAGAACTGAGTGAGATTCAATCT
TGTTCATTTCCTTTTATCTCCATCCATGGCATCATTGAATTTGAATCAGA
TCATAAGCAACAGCAACACCTCCTTTGCTGTGAATCGTCGGCCAGGATTG
CGCTTGCCTAGTCGAATTGGGTTGAGGGTTTTGGCTTCTGCTTCAGCTTC
AGCAGAGCCAGACTTGAGTATTACAGTAAATGGACTGCAGATGCCGAACC
CGTTTGTTATCGGATCGGGTCCACCTGGCACCAACTACACTGTCATGAAG
CGAGCCTTTGATGAAGGCTGGGGTGCTGTTGTTGCTAAAACTGTATCATT
AGATGCAGCAAAAGTTATAAACGTAACTCCTCGATATGCCCGCCTGCGAG
CAGGTGCGAATGGATCAGCCAAAGGGCAAATTATTGGGTGGGAGAACATA
GAACTCATTAGCGATCGGCCGCTTGAAACAATGTTGAAAGAATTTAAACA
ATTAAAAGCATTGTATCCGGATAGGATTCTCATTGCTTCAATTATGGAAG
AGTATAACAAAGCTGCATGGGAGGAGCTTATTGATCGAGTGGAAGAAACA
GGAATTGATGCAATAGAAGTTAATTTTTCATGTCCCCATGGCATGCCGGA
ACGTAAAATGGGGGCTGCTGTTGGCCAAGATTGTAGGCTATTGGAAGAAG
TTTGTGGTTGGATAAATGCAAAAGCTACTGTTCCTGTGTGGGCAAAGATG
ACTCCTAACATTACTGACATTACAGAGCCAGCTAGGGTGGCTCTCAGATC
AGGAAGTGAGGGAGCATCTGNNNTTAACACAATCATGAGCGTC
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