CK933378

Overview
NameCK933378
Unique NameCK933378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_PELFU (60S ribosomal protein L15 OS=Pelteobagrus fulvidraco GN=rpl15 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 9.235e-57
Identity = 82/133 (61.65%), Postives = 94/133 (70.68%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ +LWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +SVAEERAGR  GGLRVL+SYW+ EDSTYK+FEVI
Sbjct:    1 MGAYRYMQKLWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVI 133

HSP 2 Score: 73.1738 bits (178), Expect = 9.235e-57
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 664
            H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  139 HKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_PARDA (60S ribosomal protein L15 OS=Paramisgurnus dabryanus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 9.235e-57
Identity = 82/133 (61.65%), Postives = 93/133 (69.92%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  +PTRPDKARRLGYKAKQ                       YGKP + GV Q+KF RS +S AEERAGR  GGLRVL+SYW+ EDSTYK+FEVI
Sbjct:    1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRTPKPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGGLRVLSSYWVGEDSTYKFFEVI 133

HSP 2 Score: 73.1738 bits (178), Expect = 9.235e-57
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNNT 664
            H AIR +P   W+   VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R NT
Sbjct:  139 HKAIRRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_DICDI (60S ribosomal protein L15 OS=Dictyostelium discoideum GN=rpl15-1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.705e-56
Identity = 73/133 (54.89%), Postives = 85/133 (63.91%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ EL++KKQSD +RFL RVRCWEYR  P   R + PTR DKARRLGYKA Q                        GKP   GV +LK  R+ RSVAEER GR+   LRVLNSYW+N+DSTYKY+EVI
Sbjct:    1 MGAYKYLQELYKKKQSDAVRFLLRVRCWEYRNLPVCHRASHPTRVDKARRLGYKATQGFVVYRIRVRRGGRKRQVPGGRTGGKPKTHGVNELKPSRNLRSVAEERVGRRCPNLRVLNSYWVNQDSTYKYYEVI 133

HSP 2 Score: 94.3597 bits (233), Expect = 7.705e-56
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 2 
Query:  485 AHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKG-HLHHKARPSRRATWKRNNT 664
            +HNAIRNDPR NW+C PVHKHRELRGLTSAG K RGLR KG H   K RPSR+A +KR NT
Sbjct:  138 SHNAIRNDPRYNWICKPVHKHRELRGLTSAGIKARGLRRKGTHRASKTRPSRQANYKRRNT 198
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.310e-55
Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY +V EL+RKKQSDV+R+L RVRCW+YRQ   + R  RP+RPDKARRLGYKAKQ                       YGKP + GV QLK  R+ +SVAEER GR++GGLRVLNSYW+ +D+ +KY+EVI
Sbjct:    1 MGAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQGFLIYRIRVRRGGRKRPVHKGCTYGKPKSHGVNQLKPYRNLQSVAEERVGRRMGGLRVLNSYWVAQDAAFKYYEVI 133

HSP 2 Score: 82.4185 bits (202), Expect = 1.310e-55
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATWKRNN 661
            P HNA+R DP++NW+CN VHKHRELRGLTSAGK  RG+ GKG+ + +    SRRA W+R N
Sbjct:  137 PFHNAVRRDPKVNWVCNAVHKHRELRGLTSAGKSSRGV-GKGYRYSQTIGGSRRAAWRRKN 196
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.310e-55
Identity = 76/133 (57.14%), Postives = 89/133 (66.92%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY +V EL+RKKQSDVMR+L R+R W+YRQ     R  RP+RPDKARRLGYKAKQ                       YGKP + GV QLK  R  +SVAEER GR+LGGLRVLNSYW+ +D+ +KYFEVI
Sbjct:    1 MGAYRYVQELYRKKQSDVMRYLLRIRVWQYRQMTRFHRAPRPSRPDKARRLGYKAKQGFSIFRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRCLQSVAEERVGRRLGGLRVLNSYWVAQDAAHKYFEVI 133

HSP 2 Score: 85.5001 bits (210), Expect = 1.310e-55
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATWKRNN 661
            PAHNAIR DP +NW+CN VHKHRELRGLTSAGK  RGL GKG+ + +    SRRA W+R N
Sbjct:  137 PAHNAIRRDPNVNWICNAVHKHRELRGLTSAGKSSRGL-GKGYRYSQTIGGSRRACWRRRN 196
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.115e-54
Identity = 76/133 (57.14%), Postives = 91/133 (68.42%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ EL+RKKQSDVMR+L R+R W+YRQ   + R  RPTRPDKARRLGY+AKQ                       YGKP + GV QLK  R  +S+AEER GR+LGGLRVLNSYWI +D++YKYFEVI
Sbjct:    1 MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVI 133

HSP 2 Score: 78.5666 bits (192), Expect = 4.115e-54
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 2 
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATWKRNN 661
            H+AIR DP+INW+C  VHKHRELRGLTSAGK  RG+ GKG+ + +    SRRA WKR N
Sbjct:  139 HSAIRRDPKINWICKHVHKHRELRGLTSAGKSSRGI-GKGYRYSQTIGGSRRAAWKRKN 196
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15B_SCHPO (60S ribosomal protein L15-B OS=Schizosaccharomyces pombe GN=rpl15b PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.116e-54
Identity = 76/133 (57.14%), Postives = 87/133 (65.41%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ                       YGKP +QGV  LK+QRS R  AEER GR    LRVLNSYW+N+D+TYK+FEVI
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVI 133

HSP 2 Score: 82.4185 bits (202), Expect = 4.116e-54
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            P+H AIR DPRINW+ NPVHKHRE RGLTS GKK RG+ GKGH ++ +   + ATW R+NT
Sbjct:  137 PSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGI-GKGHRYNNS--PQHATWLRHNT 194
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15A_SCHPO (60S ribosomal protein L15-A OS=Schizosaccharomyces pombe GN=rpl15a PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.119e-54
Identity = 76/133 (57.14%), Postives = 87/133 (65.41%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ EL +KKQSDV  FL RVR WEYRQ   I R +RP+RPDKARRLGYKAKQ                       YGKP +QGV  LK+QRS R  AEER GR    LRVLNSYW+N+D+TYK+FEVI
Sbjct:    1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVI 133

HSP 2 Score: 81.2629 bits (199), Expect = 9.119e-54
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            P+H AIR DPRINW+ NPVHKHRE RGLTS GKK RG+ GKGH  + +   + ATW R+NT
Sbjct:  137 PSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGI-GKGHRFNNS--PQHATWLRHNT 194
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.379e-50
Identity = 76/133 (57.14%), Postives = 91/133 (68.42%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ E++RKKQSDVMRFL R+R W+YR    + R  RPTRP+KARRLGYKAKQ                       YGKP + GV QLK  R+ +S+AEER GR+LGGLRVLNSYW+ +DSTYKYFEVI
Sbjct:    1 MGAYKYMQEIYRKKQSDVMRFLLRIRAWQYRHLNKLHRAPRPTRPEKARRLGYKAKQGFVIYRIRIRRGGRKRPVPKGATYGKPKSHGVNQLKPTRNLQSLAEERTGRRLGGLRVLNSYWVAQDSTYKYFEVI 133

HSP 2 Score: 64.6994 bits (156), Expect = 3.379e-50
Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 2 
Query:  488 HNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNT 664
            HN IR    +NW+C    KHRE+RG TSAG+K+RGL    H       SRR+ W R+NT
Sbjct:  139 HNVIRKSGSLNWICKHTQKHREMRGKTSAGRKHRGLGRGFHYSQTKGGSRRSCWLRHNT 197
[Close]
BLAST of CK933378 vs. ExPASy Swiss-Prot
Match: RL15_CAEEL (60S ribosomal protein L15 OS=Caenorhabditis elegans GN=rpl-15 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.405e-50
Identity = 72/133 (54.14%), Postives = 91/133 (68.42%), Query Frame = 3 
Query:   75 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVI 473
            MGAY ++ E+WRKKQSD +R+L R+R W YRQ  ++ RV RPTRP+KARRLGY+AKQ                       YGKP   GV +LK  +SK++VAE RAGR+LG LRVLNSYW+ EDSTYK++EV+
Sbjct:    1 MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVV 133

HSP 2 Score: 67.0106 bits (162), Expect = 4.405e-50
Identity = 35/62 (56.45%), Postives = 39/62 (62.90%), Query Frame = 2 
Query:  482 PAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRA-TWKRNNT 664
            P H AIR +P   W+  PVHKHRE RGLTSAG+K RGL GKG      R   +A  WKR NT
Sbjct:  137 PFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGL-GKGWRFSATRGGSQAKNWKRKNT 197
The following BLAST results are available for this feature:
BLAST of CK933378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_PELFU9.235e-5761.6560S ribosomal protein L15 OS=Pelteobagrus fulvidra... [more]
RL15_PARDA9.235e-5761.6560S ribosomal protein L15 OS=Paramisgurnus dabryan... [more]
RL15_DICDI7.705e-5654.8960S ribosomal protein L15 OS=Dictyostelium discoid... [more]
RL15_CHITE1.310e-5556.3960S ribosomal protein L15 OS=Chironomus tentans GN... [more]
RL15_ANOGA1.310e-5557.1460S ribosomal protein L15 OS=Anopheles gambiae GN=... [more]
RL15_DROME4.115e-5457.1460S ribosomal protein L15 OS=Drosophila melanogast... [more]
RL15B_SCHPO4.116e-5457.1460S ribosomal protein L15-B OS=Schizosaccharomyces... [more]
RL15A_SCHPO9.119e-5457.1460S ribosomal protein L15-A OS=Schizosaccharomyces... [more]
RL15_ORCLI3.379e-5057.1460S ribosomal protein L15 OS=Orconectes limosus GN... [more]
RL15_CAEEL4.405e-5054.1460S ribosomal protein L15 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004286_B12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933378 ID=CK933378; Name=CK933378; organism=Citrus sinensis; type=EST; length=883bp
GGGGATAGCTCTCTCATTGTAAGCGAAAACCCTAGACGCACGGATACTGC
GCATCTCAGCTCAGCTCAGAGCCAATGGGGGCTTACACGTTCGTGTCGGA
GCTATGGAGGAAGAAGCAGTCAGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGTTGGGAGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGTCCC
ACTCGACCTGACAAGGCTCGACGCTTGGGTTACAAGGCCAAGCAGGGTTA
TGTTGTTTATCGTGTGCGGGTAAGGCGCGGTGGTCGGAAGAGGCCTGTTC
CCAAGGGCATTGTGTATGGTAAACCCACAAACCAGGGTGTTACTCAACTG
AAGTTTCAGCGCAGCAAGAGGTCTGTTGCAGAGGAGCGTGCCGGTCGTAA
GTTGGGAGGTCTTAGGGTTCTCAATTCTTACTGGATCAATGAGGACTCCA
CTTATAAGTACTTTGAGGTGATTTGGTTGATCCTGCTCATAATGCCATCC
GTAATGACCCAAGAATTAATTGGTTATGCAATCCTGTCCATAAGCACAGG
GAACTCCGTGGTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGG
AAAAGGACACTTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGA
AGAGAAACAATACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTACGG
TTTTGATGTTTATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGT
TGCCATTTTGAGTCTTTTAGAGATTGAAATACTATGGAACATATCTTATT
TTGAAACCGTACATTCTAAATTAAGACATTTGTGTTTCTTGAGTNCAAAA
AAAAAAGAAAAAAAAAAAAAAAAAAANNNNNNA
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