CK933467

Overview
NameCK933467
Unique NameCK933467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 58/184 (31.52%), Postives = 87/184 (47.28%), Query Frame = 1
Query:  214 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASG 765
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK  ++           I    F D  SG
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSG 209          
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.418e-13
Identity = 60/200 (30.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:  214 QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWEKL 813
            QK  KA      GTT +  IFK+GV++ AD+RA+ G  ++ ++ +KI  + P +    AG AAD +     +  + RLH     R   V  A  LL   L+SY+G  +S   ++ G D TGP L+ +   G        ++GSGS  A  V ++ YK  ++           I    F D  SG    +  +     E L
Sbjct:   27 QKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYL 225          
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-13
Identity = 58/199 (29.15%), Postives = 95/199 (47.74%), Query Frame = 1
Query:  199 DFDEFQKDT----------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASG 765
            DF+ +Q++           KAT   + GTT +  I K+ +++ AD+RA+ G  I+ ++ KK+  I+P +    AG AAD +F    +     LH L   R+  V  A  +L   L+ Y+G  +    ++ G+D  GP L+ + + G   K    ++GSGS  A  VL++ Y+ D+            I    F D  SG
Sbjct:   11 DFEYYQRNLLLQEKGFPTPKAT---STGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQG-HIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSG 205          
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB10_MOUSE (Proteasome subunit beta type-10 OS=Mus musculus GN=Psmb10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-13
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = 1
Query:  241 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG 768
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R    K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D  GP LY V   G   +    ++GSG   A  +L+  ++ +M++          I      D  SGG
Sbjct:   34 HARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGG 210          
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB10_BOVIN (Proteasome subunit beta type-10 OS=Bos taurus GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-13
Identity = 52/178 (29.21%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  241 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG 768
            HA+  GTT    +F++GV++ AD+RA+    ++ +  +KI  I P +    AG AAD +   R       LH L+  R   V   +++L   L+ Y+G  +    ++ G D TGP LY V   G   +    ++GSG   A  VL+  ++ +M++          I      D  SGG
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKICEKIHFIAPKIYCCGAGVAADAEMTTRMAASNMELHALSTGRECRVATVTRMLRQTLFRYQGY-VGASLIVGGVDFTGPQLYSVHPHGSYSRLPFTALGSGQDAAIAVLEDRFQPNMTLEAAQELLVEAITAGILGDLGSGG 210          
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB6_YEAST (Proteasome component PRE3 OS=Saccharomyces cerevisiae GN=PRE3 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 52/189 (27.51%), Postives = 90/189 (47.62%), Query Frame = 1
Query:  250 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWEKL 813
            GT+ +A  FK+GV++ ADSR + G YI+++   K+  ++  +    +G AAD Q     +     L+        + T AS +   + Y  +   L+ G ++AG+D+   G  Y    GG +    +++ GSGS + YG  D  ++ +MS           +  A   D +SGGV  +  +   G E+L
Sbjct:   19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAAS-VFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 205          
BLAST of CK933467 vs. ExPASy Swiss-Prot
Match: PSB_STRCO (Proteasome subunit beta OS=Streptomyces coelicolor GN=prcB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 1
Query:  250 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGM---GLSVGTMIAGWD-ETGPG-LYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGG--VASVYY-----VGPNGWEKLSGDD 825
            GTT +A  F  GV++A D RA+MG  I+ + ++K+   + Y    +AG A       +   ++    E     ++S+ G +  L+ ++ S  GM   GL+V  + AG+D + G G ++  D  GGR +   F + GSGS +A G +   ++ D++           +Y A   D+A+GG  VA   Y     +  +G+ +L  D+
Sbjct:   53 GTTIVAVTFPGGVVLAGDRRATMGNMIAQRDIEKVFPADEYSAVGIAGTAGLAVEMVKLFQLELEHFEKVEGAQLSLEGKANRLSTMIRSNLGMAMQGLAVVPLFAGYDVDRGRGRIFSYDVTGGRSEERHFATTGSGSVFARGAMKKLFRDDLTEEQATTLVVQALYDAADDDSATGGPDVARRIYPIITVITEDGFRRLGEDE 257          
The following BLAST results are available for this feature:
BLAST of CK933467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB7B_ARATH1.418e-1331.52Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH1.418e-1330.00Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_SCHPO1.852e-1329.15Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB10_MOUSE1.852e-1329.21Proteasome subunit beta type-10 OS=Mus musculus GN... [more]
PSB10_BOVIN1.852e-1329.21Proteasome subunit beta type-10 OS=Bos taurus GN=P... [more]
PSB6_YEAST2.675e-1227.51Proteasome component PRE3 OS=Saccharomyces cerevis... [more]
PSB_STRCO5.959e-1228.29Proteasome subunit beta OS=Streptomyces coelicolor... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004285_B07 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IVF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933467 ID=CK933467; Name=CK933467; organism=Citrus sinensis; type=EST; length=829bp
GGGGATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTTGCAACTCTCAG
TTACATTGTCGTTTAATCTTATATTCAGTGCGTAGACATGAAGCTCGACA
CTAGCGGTCTTGAGTCCACTTCTCCTTTTTTCGGGTCAGGCGACGAGCTC
TGTCCTGAGTTATCAGCTGCACCATCATTTTCTCCACCTCTTTCTACTGA
TTTTGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCAAGG
GGACAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCTGCT
GATTCTCGAGCTAGCATGGGAGGCTATATCTCATCTCAGTCTGTGAAGAA
AATTATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAGCAG
CCGATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTACAT
GAATTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCTGCT
GGCCAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGACTA
TGATTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGACAGT
GAAGGAGGGAGGCTCAAAGGAACACGGTTCTCTGTGGGATCAGGTTCACC
ATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTATTG
AAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCATGCGACATTCAGA
GATGCAGCCAGTGGTGGTGTTGCAAGCGTTTATTATGTGGGACCAAATGG
ATGGGAGAAGCTGTCTGGTGATGATGTTG
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