CK933535

Overview
NameCK933535
Unique NameCK933535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 4.050e-25
Identity = 64/145 (44.14%), Postives = 80/145 (55.17%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 704
            AR RL  + K  +++ P G  A P     S N+M+W  +I G   T +E G F L L F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN A PA  +  QL  ++  EY RRVR+
Sbjct:    5 ARRRLMRDFKRMQQDPPAGVSASPV----SDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRK 143          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.050e-25
Identity = 60/145 (41.38%), Postives = 81/145 (55.86%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 704
            A+ RL  + K    + P G    P       N+M+W  +I G   T +E G F LTL F++ YP+KPP  +F    FHPN+Y +G +CL IL   N W P   V  IL  +Q LL+ PNPA PA  D  QLF ++  EY+RRV++
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPD----NIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDIL--QNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKK 143          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.290e-25
Identity = 61/149 (40.94%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  +++ P G  A P       N+MIW  +I G   T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y +RV++  ++
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPD----NVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEK 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 6.909e-25
Identity = 61/149 (40.94%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  +++ P G    P       N+MIW  +I G   T +E G F LT+ F+E+YP+KPP  +F    FHPNVY  G +CL IL   N W P   V  IL  IQ LL  PNP  PA +   QL+ ++  EY++RV+   +Q
Sbjct:    5 ARRRLMRDFKRLQEDPPTGVSGAPTDN----NIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDIL--QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.023e-25
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y +RV++  ++
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.023e-25
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNPA PA  +   LF    ++Y +RV++  ++
Sbjct:    5 ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDIL--QNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.478e-24
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  + + P G    P       N+++W+ +I G   + WEG  F L+L FSE+YP+  P  KF    FHPNVY  G++CL IL   N W P   +  IL  IQ LL  PNP  PA ++  +LF ++  EY R+V++  +Q
Sbjct:    5 ARRRLMRDFKRLQSDPPAGISGAPLEN----NILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDIL--QNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQ 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.903e-23
Identity = 58/149 (38.93%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L + F E YP+KPP+ KF    FHPNVY +G +CL IL   N W P   V  +L  IQ LL+ PN   PA  +   L+  +  EY +RVR+  ++
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVPD----NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDIL--QNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEK 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.903e-23
Identity = 59/149 (39.60%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L ++F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN + PA  +   L+  +  EY +RVR+  ++
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVAD----NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEK 147          
BLAST of CK933535 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.903e-23
Identity = 59/149 (39.60%), Postives = 79/149 (53.02%), Query Frame = 3
Query:  270 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 716
            AR RL  + K  + + P G  A P       N+M W  +I G   T +E G F L ++F E YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ LL+ PN + PA  +   L+  +  EY +RVR+  ++
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVAD----NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL--QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEK 147          
The following BLAST results are available for this feature:
BLAST of CK933535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
UBC2_SCHPO4.050e-2544.14Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CRYNE4.050e-2541.38Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_KLULA5.290e-2540.94Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBCD6_DROME6.909e-2540.94Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_YEAST9.023e-2540.27Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_ASHGO9.023e-2540.27Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_DICDI4.478e-2438.93Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_NECHA2.903e-2338.93Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_EMENI2.903e-2339.60Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU2.903e-2339.60Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004284_E06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IIIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933535 ID=CK933535; Name=CK933535; organism=Citrus sinensis; type=EST; length=898bp
GGGGGAATAAATAAATGGCTAAAAGGACGAAGCATATCTTCGTCTTCGAG
TCGGCGTCGTGAAATATAGAAGCATGGAAGTTGCGTAAGCTTCAATCTTC
CGTTTAAGAATATCAGAAGTCAACATCCCGGGCAGCAAGCACGTACACGG
TACTCGGTACTCGGTACTCATAAGCTTGTTTCTTCTGCAAACAAACATTG
ATTAATACAGTTAGTTATACAAGCGATCATAATTCAAACGTAAGAGTCAT
CATGTCGGGTGGTGGTATTGCTCGCGGCCGTCTTACAGAGGAGCGAAAAG
CCTGGCGCAAGAATCATCCCCACGGTTTTGTGGCCAAGCCTGAAACCAAA
GATGGTTCCGTGAATTTGATGATCTGGGAGTGTATCATTCCTGGCAAGAC
TGGGACTGATTGGGAAGGTGGCTACTTTCCTCTTACTCTCTACTTCAGCG
AAGACTATCCCAGCAAACCCCCAAAGTGTAAGTTTCCTCAAGGTTTCTTT
CATCCTAATGTCTACCCTTCTGGAACAGTATGCCTGTCAATCCTCAATGA
GGACAATGGGTGGAGACCTGCCATTACTGTGAAGCAAATTTTAGTGGGCA
TTCAGGATTTGCTGGATCAACCCAATCCTGCTGATCCTGCACAAACTGAT
GGATACCAGCTTTTCATCCAGGATCCTGCCGAGTACAAGAGAAGGGTGCG
ACAGCAGGCCAAGCAATATCCACCTGTTCTATAATGCAAGCTTGCTTAAA
TGGATATGAGTAACTCATTTGTTACCTCACATGGTTTATGTCTATCATTA
TTTACTACAGTAAACTCAGTTACAAGTGCACCAACTTTGGTGTTGAACAT
GGTTATAATATGCTACCTGTATCATTTGTGAAGGGTGCTTTTATTGGC
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