CK933540

Overview
NameCK933540
Unique NameCK933540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933540 vs. ExPASy Swiss-Prot
Match: RL5_MAGSA (50S ribosomal protein L5 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   46 RLRLH*AAAVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 492
            RLR H    V    +  +  E   +NPM+  K+QK+V+N+ VGE+     ++  A   L  +SGQ PV +KA+ ++  F +R  + + C VT+R ++  + L+  +     +V+++  +  ++F   G +  G++E I    I YD    I GMD   V
Sbjct:    3 RLRKHYDTVV----KPALQKEFNYANPMQVPKLQKIVINMGVGEAAQDSKKIESALAELTLISGQKPVSTKAKMSIAQFKLREGQVVGCKVTLRAERMYEFLDRLINIALPRVRDFRGVPGKSFDGRGNYSLGLKEQIVFPEIDYDKVETIRGMDIIFV 157          
BLAST of CK933540 vs. ExPASy Swiss-Prot
Match: RL5_AQUAE (50S ribosomal protein L5 OS=Aquifex aeolicus GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  121 NPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 489
            +PM+  ++QK+V+N+ VGE+     +L RA + L  ++GQ PV ++AR +   F +R+   I C VT+R ++    L+  +     +VK+++ L  R+F   G + FGI E I    I YD    I GMD  +
Sbjct:   32 SPMQIPRLQKIVVNMGVGEAVQDIRQLERAVEDLRAITGQQPVITRARKSEAGFKLRKGMPIGCKVTLRKERMWDFLDKLISVALPRVKDFKGLSPRSFDGRGNYAFGIAEQIVFPEIDYDKVDRIRGMDIII 164          
The following BLAST results are available for this feature:
BLAST of CK933540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RL5_MAGSA8.658e-1129.5650S ribosomal protein L5 OS=Magnetospirillum magne... [more]
RL5_AQUAE8.658e-1133.8350S ribosomal protein L5 OS=Aquifex aeolicus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004284_D05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0003_IIIF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933540 ID=CK933540; Name=CK933540; organism=Citrus sinensis; type=EST; length=833bp
GGGGGTTTGTAACTCAACATCACTCTTACATATTAGGGTTTGTTCCGTCT
CCGTCTTCACTGAGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGG
CTTCAGAGAAGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAG
CTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGC
CGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGG
CCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCA
TGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGG
ATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTG
GCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTAT
GATCCTTCCACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCG
CCCGGGTTATCGTGTAGGTCGACGCCGTAGGTGCAAGTCTCGTGTTGGGA
TTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATGGTTCCAGGTCAAA
TACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTGGTGCTTAAGCCCT
TTGTGTGATGACGATTTTGCATTTATAGTGTTGATGTTTGTAGACACTGG
CTATTACTTGGCGTTTTGCAAACCTGAGTTAGATGCTTTTGGTAGTTCAA
GATATTTTGTTATTTGTCTATTTAAATTTTATTATCAAGATTATGGCTTA
GCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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