CK933876

Overview
NameCK933876
Unique NameCK933876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: ACSM4_MOUSE (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Mus musculus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSEN-----EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 331
            V R  ++I   GY++ P E+E+ L+ HP + ++AVV  PD   G+   A++V  A  + S       E+ D V    APYK  R+V FV  +PK  +GKI R  L
Sbjct:  468 VGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPYKCSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVL 572          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: ACSM4_RAT (Acyl-coenzyme A synthetase ACSM4, mitochondrial OS=Rattus norvegicus GN=Acsm4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSEN-----EVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 331
            V R  ++I   GY++ P E+E+ L+ HP + ++AVV  PD   G+   A++V  A  + S       E+ D V    APYK  R+V FV  +PK  +GKI R  L
Sbjct:  468 VGRADDVIISSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFIVLAAPFKSSNREKLTAELQDHVKNSTAPYKYPRKVEFVQELPKTITGKIKRNVL 572          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: ACSM1_MOUSE (Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Mus musculus GN=Acsm1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   47 ELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV--REAGSRLSE---NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDL 331
            ++I   GY++ P E+E  L  HP ++++AVV  PDK+ G+   A++V   E  S   E    E+   V    APYK  R+V FV+ +PK  +GKI RK+L
Sbjct:  466 DVINASGYRIGPVEVENALAEHPAVAESAVVSSPDKDRGEVVKAFIVLNPEFLSHDQEQLIKELQHHVKSVTAPYKYPRKVEFVSELPKTVTGKIKRKEL 565          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: ACSF3_HUMAN (Acyl-CoA synthetase family member 3, mitochondrial OS=Homo sapiens GN=ACSF3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = 2
Query:   47 ELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIK 337
            ++IK  GY+V   E+E  LL HP I+D AV+  PD   GQ   A V    G  LS  E+ ++    +APY     +  V  IP+N  GKI +K LI+
Sbjct:  475 DIIKTGGYKVSALEVEWHLLAHPSITDVAVIGVPDMTWGQRVTAVVTLREGHSLSHRELKEWARNVLAPYAVPSELVLVEEIPRNQMGKIDKKALIR 571          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: ACSA_PARL1 (Acetyl-coenzyme A synthetase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=acsA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 2
Query:   38 RLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSE---NEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 343
            R+ +++   G+++  AE+E+ L+ HPK+++AAVV +P    GQ   AYV   AG   +E    E++ +V +++ P      + F   +PK  SGKI+R+ L K+A
Sbjct:  512 RVDDVLNVSGHRMGTAEVESALVAHPKVAEAAVVGYPHDIKGQGIYAYVTLIAGEAATEELRKELVTWVRKEIGPIASPDLIQFAPGLPKTRSGKIMRRILRKIA 616          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: LCFA_ECOLI (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli (strain K12) GN=fadD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDR K++I   G+ V P E+E +++ HP + + A V  P   +G+    +VV++  S L+E  ++ F  RQ+  YK  + V F   +PK+  GKILR++L   A  K+
Sbjct:  451 VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS-LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: LCFA_ECOL6 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDR K++I   G+ V P E+E +++ HP + + A V  P   +G+    +VV++  S L+E  ++ F  RQ+  YK  + V F   +PK+  GKILR++L   A  K+
Sbjct:  451 VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS-LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: LCFA_ECO57 (Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 2
Query:   32 VDRLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLATSKL 355
            VDR K++I   G+ V P E+E +++ HP + + A V  P   +G+    +VV++  S L+E  ++ F  RQ+  YK  + V F   +PK+  GKILR++L   A  K+
Sbjct:  451 VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPS-LTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKV 557          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: ACSA_METPB (Acetyl-coenzyme A synthetase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=acsA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.726e-11
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   38 RLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVV---REAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIKLA 343
            R+ ++I   G+++  AE+E+ L+ HPK+S+AAVV +P    GQ   AYV     E GS     E++ +V + + P      + F   +PK  SGKI+R+ L K+A
Sbjct:  514 RVDDVINVSGHRMGTAEVESSLVAHPKVSEAAVVGYPHNVKGQGIYAYVTLNEGEDGSDELRKELVTWVRKDIGPIASPDLIQFAPGLPKTRSGKIMRRILRKIA 618          
BLAST of CK933876 vs. ExPASy Swiss-Prot
Match: YDAB_BACSU (Putative acyl--CoA ligase ydaB OS=Bacillus subtilis GN=ydaB PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.866e-11
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:   38 RLKELIKYKGYQVPPAELEALLLTHPKISDAAVVPFPDKEAGQYPMAYVVREAGSRLSENEVMDFVARQVAPYKRVRRVAFVASIPKNPSGKILRKDLIK 337
            R K++I Y G  V P ++E ++   P I + AVV  PD   G+ P A++V+  G R++E +V+ F   +++ YK +  V FV  +PKN  GK+ +KD+++
Sbjct:  400 RYKDVIIYGGDNVYPDQVEEVIQQIPGILETAVVGIPDPLYGEKPKAFIVKNGGQRITEEDVIAFCKERLSAYK-IPEVEFVNELPKNNLGKV-KKDVLR 497          
The following BLAST results are available for this feature:
BLAST of CK933876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
ACSM4_MOUSE2.184e-1137.14Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
ACSM4_RAT2.853e-1137.14Acyl-coenzyme A synthetase ACSM4, mitochondrial OS... [more]
ACSM1_MOUSE2.853e-1139.00Acyl-coenzyme A synthetase ACSM1, mitochondrial OS... [more]
ACSF3_HUMAN2.853e-1139.18Acyl-CoA synthetase family member 3, mitochondrial... [more]
ACSA_PARL12.853e-1134.29Acetyl-coenzyme A synthetase OS=Parvibaculum lavam... [more]
LCFA_ECOLI3.726e-1135.19Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECOL63.726e-1135.19Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
LCFA_ECO573.726e-1135.19Long-chain-fatty-acid--CoA ligase OS=Escherichia c... [more]
ACSA_METPB3.726e-1136.19Acetyl-coenzyme A synthetase OS=Methylobacterium p... [more]
YDAB_BACSU4.866e-1136.00Putative acyl--CoA ligase ydaB OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004278_A02 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933876 ID=CK933876; Name=CK933876; organism=Citrus sinensis; type=EST; length=534bp
GGGCATTGATGATGATGGCTTCATTTTTATTGTTGATCGATTAAAGGAGC
TGATCAAGTACAAAGGTTATCAGGTCCCTCCAGCAGAACTAGAGGCTTTG
CTACTAACTCATCCAAAAATTTCTGATGCTGCTGTCGTACCATTTCCTGA
CAAGGAGGCTGGGCAATATCCCATGGCATATGTGGTACGGGAAGCTGGAA
GTCGATTATCAGAGAATGAAGTCATGGATTTTGTAGCAAGACAGGTTGCC
CCATACAAGAGGGTTCGGAGAGTGGCATTTGTAGCTTCAATACCCAAGAA
TCCATCAGGCAAGATTCTCAGGAAGGATCTCATCAAGCTTGCGACATCCA
AACTTTGAATGCCTGGGGCTTTTGCCCAAAGAGAGGGCCTCAAACAGAGA
AGTAGTGGTTCTATTTCTCATTCAACATCTTGTTTATGCCTGTAGCAAAA
TTATGCTGTACTAAAATCCGTTATGCTGGTTTATATATATTTTGCCTTGT
CACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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