CK933908
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.932e-16 Identity = 43/122 (35.25%), Postives = 69/122 (56.56%), Query Frame = 3 Query: 135 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 G +HLK +NAP++W + + + K S GPH LPL++++R+ L YA T +E ++ + + +D +VR D +P G MDV+ I N+ +R++ L I EEA FKLC+ Sbjct: 5 GGSRHLKAINAPRYWPILRKEYRWVVKSSPGPHPISRSLPLLILVRDMLGYAKTGKEARRLIAEGYFKIDGRVRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCR 126
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16 Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 H+ R P ++ K + +P++GPH + +PL +++R+ LK A T RE I+ VLVD KVR D YP G MD+VSIP + FR++ D RL I +EA +K Sbjct: 3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYK 117
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16 Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 138 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 +K+HL+ L P+ W + K G + KPS GPH +P+ + LR+ L A REV +L VLVD + D +P G DV++IP+ NE +R+L D +G+ L I EEA K K Sbjct: 5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGK 126
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16 Identity = 45/118 (38.14%), Postives = 60/118 (50.85%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCK 500 H KRL+ P+ W K G + GPH LPL +I+R+ LK RE IL + VLVD R D +P G DV+++P NE +R+ D KGR LH + KLC+ Sbjct: 3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCR 119
BLAST of CK933908 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 3 Query: 147 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFK 491 HL++ AP W + K GG +A +PS+GPH LPL +++R+ L+YA T RE I+ + ++ VD VR D +P G MDVV I T E +R++ D + L I EA K Sbjct: 3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALK 118 The following BLAST results are available for this feature:
BLAST of CK933908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933908 ID=CK933908; Name=CK933908; organism=Citrus sinensis; type=EST; length=502bpback to top |