CK933929
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LA_BOVIN (Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.233e-12 Identity = 50/168 (29.76%), Postives = 91/168 (54.17%), Query Frame = 1 Query: 361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEK 843 L+ +I Q+EYYF D NLP DK++ I K EG+VP+ ++ F +L RLT + IV AL +S L+ +S + K++R P+ EV D K +V ++ P D ++++++ + G++ +I +R + ++ K S F ++++E+A+K Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDAALDDIKEWLEDKGQVLNIQMR--RTLHKAFKGS-----------IFAVFDSIESAKK 166
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LA_RAT (Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12 Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735 L+ +I Q+EYYF D NLP DK++ I K EG+VP+ + F +L RLT + IV AL +S +L+ VS++ K++R P+ EV D K +V ++ P D ++++++ + G+I +I +R Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMR 143
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LA_MOUSE (Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 361 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVKRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 735 L+ +I Q+EYYF D NLP DK++ I K EG+VP+ + F +L RLT + IV AL +S L+ VS++ K++R P+ EV D K +V ++ P D ++++++ + G+I +I +R Sbjct: 13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMR 143
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LA_DROME (La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12 Identity = 49/171 (28.65%), Postives = 87/171 (50.88%), Query Frame = 1 Query: 364 KQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALR--ESSLLVVSSNGKKVKRLNPLPVTEVRDPKL-----FTVLVENLPEDHSVENMQRIFAEAGKIKSICIR----DPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEK 843 ++ II+QVEYYF D NL DK++ I KN++G+VP+SV+ +F++L L+ + + IVAAL E L+ +S + ++R P+ E + + T + P D + + A K+ ++ +R P + K S + ++ AF+E E + E+ Sbjct: 51 ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKER 221
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LAH1_SCHPO (La protein homolog OS=Schizosaccharomyces pombe GN=sla1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11 Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 1 Query: 304 EDPIKDHENSSTPAVLTDDLKQ-------RIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES-SLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENL--PEDHSVENMQRIFAE-AGKIKSICIRDPNVVEESKKSSKYEYLVSNKLHAFVEYETVEAAEK 843 +D + + T DD K+ ++KQVE+YFSD NLP DK++ +KN +G+VPI IA+F++++R A IV ALR+S LL V G+KV+R+ PL + + +V + +D + +++ F E AG I ++ +R ++ KK K FVE++ + A K Sbjct: 37 KDTTSEEKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKN-DGWVPIQTIANFKRMRRFQPLEA-IVNALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKGFGDEKDDTQIALEKFFEENAGPISAVRMRR----DDDKKF---------KGSVFVEFKEPDVANK 212
BLAST of CK933929 vs. ExPASy Swiss-Prot
Match: LARP4_MOUSE (La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11 Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 319 DHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVKRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIF 699 D S+ A+ T+DLK+ + KQ+E+ FS ENL D Y+++ + + + FVPI +A+ ++K+LT N I+ LR S ++ V G+KV+ + K V++ +PE VE ++ +F Sbjct: 101 DVSGESSSAISTEDLKECLKKQLEFCFSRENLSKDLYLIS--QMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLRSSPMVQVDEKGEKVRPSH----------KRCIVILREIPETTPVEEVKALF 215 The following BLAST results are available for this feature:
BLAST of CK933929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CK933929 ID=CK933929; Name=CK933929; organism=Citrus sinensis; type=EST; length=846bpback to top |