CK933939

Overview
NameCK933939
Unique NameCK933939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:895..1586. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  157 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 432
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  157 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 432
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  103 LVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 429
            +++ +V+  L+  P  + AITC  V+G+L PC+ +LRSGG     CC G + L  A RT  DR+TAC C K AA  +  +  + A+ LPG CG+S    I+ + +C+ +
Sbjct:   10 ILAMIVMAQLMVHP--SVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  160 ITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 429
            + CGQV+ SLA CI FL  G   P   CC GV++L   A T+ DR+ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   94 ALKLVSALVLCMLVTGPLSAQ-AITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVS-IPYKISTSTDCSKV 429
            A+ +V  +V  M V G +  + AI+C QV  ++ PC  +L      P   CC  +R L++  + TPDRQ  CNCLK  A+S   + L  AA LPG C V+ +   IS + DCSKV
Sbjct:    9 AVFVVGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   88 MAALKLVSAL-VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSG-GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 429
            M  LK ++ + VL +      S  AI+C  V   L PC+ +L SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+ ++    A  L   CG S+P   S + DC+ V
Sbjct:    1 MNVLKCLAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK933939 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  160 ITCGQVSGSLAPCIGFLRSGGPIP-MPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 429
            + CGQV+ +L+ C+ FL      P + CC GV  L   A T  D++ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C ++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CK933939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_AMACA5.326e-1846.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP5.326e-1846.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HELAN2.922e-1638.53Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO5.511e-1543.96Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA2.094e-1440.00Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP8_ARATH2.315e-1337.93Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPB_RICCO4.367e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933939 ID=CK933939; Name=CK933939; organism=Citrus sinensis; type=EST; length=692bp
GGGGACTCAACTCAAGCTTCTGAACAGCTAGCCATAAACAAAGGCAAAAA
AAAAAAAAGAAAAAGAAAATCTCAGGAGAAATCTCAAATGGCTGCCCTCA
AGCTTGTTTCAGCTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGT
GCTCAGGCCATAACATGTGGGCAGGTGAGTGGCTCATTGGCACCATGCAT
CGGTTTCTTGAGATCGGGCGGCCCTATACCTATGCCATGCTGCAACGGCG
TCAGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCA
TGCAACTGCTTGAAGCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAA
TAATGCTGCTGGTCTTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGA
TCAGCACCTCCACTGACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCC
GTTGATTTTCAGGTTTAAGTTGACGGAGTAGAATAAATGTATAATAATAA
GGACATTTTTGTGTCCGATTTATGAGTCTCTCTCTACACTTTGTACTGCG
AGTCTCGTTCGCGCCCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTT
CATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCC
TTGTGTTCAGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top