CK933995

Overview
NameCK933995
Unique NameCK933995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:71..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.560e-43
Identity = 85/149 (57.05%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 505
            ME+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  A +HY     +PFF  L+++ITSGPV+AM+WEG+GV+ + R +IGAT P  + PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSWRIE 151          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.560e-43
Identity = 91/155 (58.71%), Postives = 111/155 (71.61%), Query Frame = 2
Query:   23 NSQNKLVSLNLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSS 484
            N    LV L     E++FI IK    QR L+GEII RFEKKGF L G+K++      A KHYEDL+ KPFF  L+++ +SG VVAM++EG+ VV+TGR +IGAT+P+QSAPGTIR DL I TGRNIIHGSDS ESA  EIALWF +  I NW S+
Sbjct:   59 NKSVPLVGLPGTNQERSFIAIKVSSTQRRLIGEIIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLVKFFSSGAVVAMVFEGKDVVRTGRVLIGATDPSQSAPGTIRFDLCIETGRNIIHGSDSNESAAHEIALWFKEDEIANWVST 213          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_SCHPO (Nucleoside diphosphate kinase OS=Schizosaccharomyces pombe GN=ndk1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43
Identity = 82/148 (55.41%), Postives = 104/148 (70.27%), Query Frame = 2
Query:   65 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 505
            EQTFI +KPD VQRGL+G II +FE KG+ L+ LK +   R   E+HY +   KPF+  L+ ++ SGPV AMIWEG+  VKTGR ++GA+NP  SAPGTIRGD  I  GRN+ HGSDS+ESA +EI LWF    I  +  ++ PWIYE
Sbjct:    4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43
Identity = 83/149 (55.70%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43
Identity = 80/148 (54.05%), Postives = 107/148 (72.30%), Query Frame = 2
Query:   65 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 505
            E+TFI IKPD VQRGL+G+I  RFE++G+ L  +K++   +   E HY++L  KPFF  L+ Y++SGPV+AM+WEG  VVK  R ++GATNP  S PGTIRGD +I TGRNI+HGSDS+ SA++EI  WF P+    W S+   W+YE
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.660e-43
Identity = 82/149 (55.03%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPV+AM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++A  EI LWF +   ++W  S   W  E
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGSDTAVFEINLWFQENELVDWNPSDQAWRVE 151          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.538e-43
Identity = 84/149 (56.38%), Postives = 107/149 (71.81%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 505
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   R  A +HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGSD  ++AQ EI LWF    +N W  S   W  E
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSWRVE 151          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 2
Query:   65 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 505
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  KPF+  L++Y++SGPVVAM+W+G  VV   R +IGAT+P  + PGTIRGD  +  G+N+IHGSDSVESA +EIALWF +   + W+ S   W+YE
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_PROMA (Nucleoside diphosphate kinase OS=Prochlorococcus marinus GN=ndk PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.741e-43
Identity = 85/149 (57.05%), Postives = 105/149 (70.47%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 505
            +E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +   +  AEKHY     +PFF  L+ +ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDL I  GRN+IHGSD  E+A  EI LWF    + NW  S   W  E
Sbjct:    3 VERTFLAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLIPSKELAEKHYGVHKERPFFTGLVGFITSGPVVAMVWEGDGVILSARKLIGATKPLEAEPGTIRGDLGINIGRNVIHGSDGPETASFEIDLWFNSSELNNWNPSDQKWRVE 151          
BLAST of CK933995 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 81/148 (54.73%), Postives = 108/148 (72.97%), Query Frame = 2
Query:   62 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIY 502
            ME+TF+M+KPDGVQR L+GEI++RFE+KG  L G KLM V    A +HY++ + KPFFG L+++ITSGPV AM+WEGE  +   R +IG TNP ++ PGTIRGD  +  G+NIIHGSDS ESA +EI L+F  D  +  +  ++ WIY
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEALPGTIRGDFGMFVGKNIIHGSDSPESAAREINLFFKEDELVEDEKLMNQWIY 148          
The following BLAST results are available for this feature:
BLAST of CK933995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PROMM1.560e-4357.05Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKM_DICDI1.560e-4358.71Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDK_SCHPO2.037e-4355.41Nucleoside diphosphate kinase OS=Schizosaccharomyc... [more]
NDK_PROM12.037e-4355.70Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_BRUMA2.037e-4354.05Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDK_PROMT2.660e-4355.03Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROM34.538e-4356.38Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK3_MOUSE5.927e-4354.05Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_PROMA7.741e-4357.05Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_BACLD1.011e-4254.73Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_G06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933995 ID=CK933995; Name=CK933995; organism=Citrus sinensis; type=EST; length=673bp
GGGGTGCTGTGCTATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGA
ATCTCAAAGAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTC
CAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTT
CTCTTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGA
AGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAG
TACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGT
TGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTG
CTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATT
ATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTG
GTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCT
ATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGA
CTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTG
GTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTGGGCAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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