CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:849..1568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.098e-37
Identity = 71/126 (56.35%), Postives = 88/126 (69.84%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 382
            Y GKD  C+F+ +     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C  TP  VNHAV+AVGYG ++G+ YW++KNSWG  WG++GYF +E GKNMCG+A CASYP+
Sbjct:  205 YIGKDSSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASYPI 330          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVVA 388
            YT  +G C+++ +    +V     +  G+E EL++ VG  RP +VA +V   F  Y+SG+Y S  C  +P+ VNHAV+AVGYG + G  YW++KNSWG  WG+ GY +M   + NMCGIA+ AS P+VA
Sbjct:  197 YTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQSQTC--SPLRVNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRGNMCGIASLASLPMVA 323          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y  +DG C+F S +V        NI  G+E  LQ AV  + P+SV  +     F+FY SGVY    C  +P  ++HAV+AVGYG E G  +WL+KNSW  +WGD GY KM   + N CGIAT ASYP+V
Sbjct:  197 YEARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSC--SPSYLDHAVLAVGYGSEGGQDFWLVKNSWATSWGDAGYIKMSRNRNNNCGIATVASYPLV 323          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 61/130 (46.92%), Postives = 76/130 (58.46%), Query Frame = 2
Query:    5 YTGKDGV-CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 385
            YT KD   C++ +E         V+I  G E  L  AV  V PVSVA +     F+FY+SG+Y    C +   D++H V+ VGYG E G  YW++KNSWGE WGD GY  M    KN CGIAT ASYP+V
Sbjct:   91 YTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSE--DLDHGVLVVGYGFEGGKKYWIVKNSWGEKWGDKGYIYMAKDRKNHCGIATAASYPLV 218          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 63/131 (48.09%), Postives = 77/131 (58.78%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYG----VEDGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYP 379
            Y GKDG C++ SEN    + D VN+    E  L  AV  + PVS A +   D FRFY  G+Y    C +    VNHAV+ VGYG    V+DG  YWLIKNSWGE WG +GY ++     N CGIA+ ASYP
Sbjct:  204 YEGKDGPCRYRSENASANITDYVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSS--YFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASYP 331          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 62/133 (46.62%), Postives = 78/133 (58.65%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 385
            Y G    C++ +EN    V D V I  G E+ L  AV  V P+SVA +   D F+FY SG+Y   +C    + +NHAV+ VGYG E    DG  YWL+KNSWGE WG  GY K+     N CGIAT A+YP+V
Sbjct:  204 YIGPGRKCRYHAENSAANVRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKR--VHLNHAVLVVGYGFEGEESDGNSYWLVKNSWGEEWGMKGYIKIAKDWNNHCGIATLATYPIV 333          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 59/129 (45.74%), Postives = 75/129 (58.14%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y  +D  C+F + ++G     SV +    E+ LQ AV  V P+SVA +     F+FY SGVY    C  T +D  H V+AVGYG E    YWL+KNSWG +WGD GY KM   + N CGIA+  SYP V
Sbjct:  196 YEAEDRSCRFDANSIGAICTGSVEVQ-HTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLD--HGVLAVGYGTESTKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIASEPSYPTV 321          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y G D  C F+   +G      V+I  G E++++ AV  + PVSVA +   + F+ Y  GVY+  +C    +D  H V+ VGYG  E G+ YWL+KNSWG  WG+ GY KM   + N CGIAT +SYP V
Sbjct:  212 YEGIDDSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLD--HGVLVVGYGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQNNQCGIATASSYPTV 339          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 385
            Y G+   C++ +EN    V D V I  G+E+ L  AV  V P+SVA +   G F+FY SG+Y   +C    + +NHAV+ VGYG E    DG  +WL+KNSWGE WG  GY K+     N CGIAT ++YP+V
Sbjct:  204 YRGQGRECRYHAENSAANVRDFVQIP-GSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKR--VHLNHAVLVVGYGFEGEESDGNSFWLVKNSWGEEWGMKGYMKLAKDWSNHCGIATYSTYPIV 333          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 385
            Y  +D  C+F+S  +G      V I  G+E  L+ A   + P+SVA +     F+ Y +GVY    C ++ +D  HAV+AVGYG E G  +WL+KNSW  +WG+ GY KM   + N CGIAT A YP V
Sbjct:  196 YEARDNTCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLD--HAVLAVGYGSEGGQDFWLVKNSWATSWGESGYIKMARNRNNNCGIATDACYPTV 322          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CATH_MOUSE1.098e-3756.35Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATLL_FASHE1.757e-2744.96Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CYSP2_HOMAM6.677e-2747.29Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATL1_CHICK3.102e-2446.92Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATJ_MOUSE3.102e-2448.09Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
TEST2_MOUSE4.051e-2446.62Testin-2 OS=Mus musculus PE=2 SV=1[more]
CYSP3_HOMAM1.179e-2345.74Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATL_SARPE1.179e-2343.08Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
TEST2_RAT1.539e-2345.11Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CYSP1_HOMAM2.011e-2342.64Digestive cysteine proteinase 1 OS=Homarus america... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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