CK934000

Overview
NameCK934000
Unique NameCK934000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:849..1568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 385
            YT KDG CK S +     V    +I   + DEL   +   R V+VA +  + ++FY+SGV S  KC     ++NH VV VG   +     W I+NSWG +WG+ G+ ++  G + CGI    S+P++
Sbjct:  200 YTAKDGTCKTSVKRPYTHVQGFKDID--SCDELAQTIQ-ERTVAVAVDA-NPWQFYRSGVLS--KCTK---NLNHGVVLVGVQADGA---WKIRNSWGSSWGEAGHIRL-AGGDTCGICAAPSFPIL 313          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  128 PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 358
            P+     V     +Y+SGVY  T  G   +   HA+  VGYG  +DG  YW+IKNSWG +WG++GYF++  G N C I
Sbjct:  218 PLQTMIVVYADLSYYESGVYKHTY-GTINLGF-HALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRI 293          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: BROM2_ANACO (Stem bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 41/131 (31.30%), Postives = 62/131 (47.33%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM----EMGKNMCGIATCASYPVV 385
            Y    G CK         +     +    E  + +AV   +P++VA +    F++YKSGV++   CG +   +NHAV A+GYG +D + Y      WG  WG+ GY +M         +CGIA    YP +
Sbjct:   89 YKAAKGTCKTDGVPNSAYITGYARVPRNNESSMMYAVSK-QPITVAVDANANFQYYKSGVFNG-PCGTS---LNHAVTAIGYG-QDSIIY---PKKWGAKWGEAGYIRMARDVSSSSGICGIAIDPLYPTL 210          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 46/133 (34.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:    5 YTGKDGVCKFSSENVGVQVLDSVNITL---GAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEM----GKNMCGIATCASYP 379
            Y  K G C+  ++ VG  ++ +  +       E  L +A+   +PVSV  E     F+ YK G++    CG     V+HAV AVGYG   G  Y LIKNSWG  WG+ GY +++        +CG+   + YP
Sbjct:  220 YKAKQGTCR--AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-CGTK---VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 345          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = 2
Query:    2 GYTGKDGVCKFSSENVGVQVLDSVN----ITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA*SAPEEIVGSGYQQVI 436
            GYTG+D     + E    +V+ ++N    + +  E  L+ AV   +P+SV     +    YKSGVY    C N   D  H V+ VGYG   D   YWLI+NSWG  WG+ GY +++         C +A    YP+ + S+   +  S ++ V+
Sbjct:  217 GYTGEDTAACKAIEMKTTRVV-TINGHEVVPVNDEMSLKKAVAY-QPISVMISAAN-MSDYKSGVYKGA-CSNLWGD--HNVLIVGYGTSSDEGDYWLIRNSWGPEWGEGGYLRLQRNFHEPTGKCAVAVAPVYPIKSNSSSHLLSPSVFKLVV 364          
BLAST of CK934000 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = 2
Query:  164 RFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV------------------PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 388
            + YK GV  +T     P  V+H+V+ VG+G  + V                  P+W++KNSWG  WG  GYF++  G N CGI     YP+ A
Sbjct:  270 KLYKKGVIEATPTSCDPFLVDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI---TKYPLTA 359          
The following BLAST results are available for this feature:
BLAST of CK934000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
CATL1_PARTE5.136e-1136.22Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATB1_GIALA5.136e-1143.59Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
BROM2_ANACO5.136e-1131.30Stem bromelain OS=Ananas comosus PE=1 SV=1[more]
PAPA3_CARPA6.708e-1134.59Caricain OS=Carica papaya PE=1 SV=2[more]
CPR2_ARATH8.761e-1132.47Probable cysteine proteinase At3g43960 OS=Arabidop... [more]
CATW_FELCA8.761e-1135.48Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934000 ID=CK934000; Name=CK934000; organism=Citrus sinensis; type=EST; length=720bp
GGGCTACACCGGAAAAGATGGTGTCTGCAAATTCTCATCTGAAAATGTTG
GCGTCCAAGTCCTGGACTCAGTCAACATTACCTTGGGTGCTGAAGATGAA
TTACAGCATGCAGTTGGTCTTGTTCGACCTGTGAGTGTGGCATTTGAAGT
AGTAGATGGATTCCGATTTTACAAGAGTGGAGTTTACAGCAGCACTAAAT
GTGGAAATACTCCCATGGATGTGAACCATGCCGTCGTTGCTGTTGGGTAC
GGAGTTGAAGATGGTGTTCCATATTGGCTGATTAAGAACTCTTGGGGAGA
GAACTGGGGCGATCATGGCTACTTTAAGATGGAGATGGGGAAGAACATGT
GTGGTATTGCAACTTGTGCATCATACCCAGTTGTGGCTTAGTCTGCTCCT
GAAGAAATAGTTGGATCTGGCTATCAGCAAGTCATTTGCTCATAAAACTT
ATATTATTTCACTCAAGAATGATAGCAGAATGGTTGGCTTTATGTACGAA
ATAAATTCGGAGATTAATGTCCATATAATCTACAATAGCAATGCATGGCT
GCTTGATGTTCAAAATAAATTCTGAGATCTATGTCCATGTAAACAGTCAT
TGTGACTAGGACACCAACGATGTTATATATATTTTGTCAATGCAAGGTAG
TTGTTATATGGAAGCTTTAGGCAAATATCAATGCATTGCTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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