CK934056

Overview
NameCK934056
Unique NameCK934056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934056_ssr41 microsatellite CK934056_ssr41:41..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1550 contig Csv1_Contig1550:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.418e-52
Identity = 106/255 (41.57%), Postives = 148/255 (58.04%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYDKPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +               ML G+A K +W+++ +  GKP DKPN+  G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ W
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW 260          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.419e-52
Identity = 108/261 (41.38%), Postives = 156/261 (59.77%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYDKPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P + +               ML G+A K +W++ RK+QGKP+DKPNI TG  VQ+CW KFA YF             Y+M P +A++  DENTI V   LG T T ++EDVK + + L K  +ETG D PIHVDAASGGF+APFL P++ W
Sbjct:    1 MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSPESSETIGCSTTGSSEAA--MLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHVDAASGGFVAPFLQPEIVW 258          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 5.388e-52
Identity = 105/255 (41.18%), Postives = 148/255 (58.04%), Query Frame = 3
Query:  174 TDSR-EILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYDKPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            TD R E+L+S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +               ML G+A K +W+++ +  GKP +KPN+  G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K   +TG D  +H+DAASGGF+APF+ PD+ W
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVW 260          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.916e-49
Identity = 101/263 (38.40%), Postives = 151/263 (57.41%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYD--KPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +              ML G+A K  W+++ ++ G   +  KPN+   +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +L+ + N++T +   IHVDAASGG  APF+ P+LEW
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEW 261          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.503e-49
Identity = 101/263 (38.40%), Postives = 151/263 (57.41%), Query Frame = 3
Query:  153 MVISTTETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYD--KPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +              ML G+A K  W+++ ++ G   +  KPN+   +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +L+ + N++T +   IHVDAASGG  APF+ P+LEW
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHVDAASGGLYAPFVEPELEW 261          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 5.576e-49
Identity = 103/253 (40.71%), Postives = 145/253 (57.31%), Query Frame = 3
Query:  177 DSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYDKPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            D  + L   +        I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T ++     ++   I+KN +D DEYP + E++NRC++++A L+N P  D                ML GLA K  W++ RK+ G PYDKPNI TG  VQ+CW KFA YF           G YVMN  + ++ VDENTI V   LG T T ++EDV  + + L K  +E+G + PIHVDAASGGF+APF+  ++ W
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHVDAASGGFVAPFIQQEIIW 256          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.737e-42
Identity = 92/258 (35.66%), Postives = 140/258 (54.26%), Query Frame = 3
Query:  168 TETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPY--DKPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+              ML G+A K  W+++ ++ G      KPN+   +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++ L + N +T +   IHVDAASGGF  PF+ PD+ W
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIW 259          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.870e-42
Identity = 92/258 (35.66%), Postives = 140/258 (54.26%), Query Frame = 3
Query:  168 TETDSREILNSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPY--DKPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+              ML G+A K  W+++ ++ G      KPN+   +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++ L + N +T +   IHVDAASGGF  PF+ PD+ W
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIW 259          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.602e-42
Identity = 91/246 (36.99%), Postives = 132/246 (53.66%), Query Frame = 3
Query:  204 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYD--KPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D               ML GLA K +W+   +++G      +PN+   +  QVCWEKF  Y+            +  ++  K  +LVDE TI V  ILG T TG+F+D++LL + +   NE       IH+D ASG    PF+ P+L W
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDEKVEAYNETNEHQLVIHIDGASGAMFTPFVNPELPW 262          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.509e-41
Identity = 90/246 (36.59%), Postives = 131/246 (53.25%), Query Frame = 3
Query:  204 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYD--KPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   +               ML GLA K +W+   +++G      +PN+   +  QVCWEKF  Y+            +  ++  K  ELVDE TI +  ILG T TG+F+D+ LL + +   NE       IH+D ASG    PF+ P+L W
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDEKVEAYNEANEHQLVIHIDGASGAMFTPFVNPELPW 262          
The following BLAST results are available for this feature:
BLAST of CK934056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO571.418e-5241.57Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADA_DICDI2.419e-5241.38Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCEB_ECOL65.388e-5241.18Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCE_LACLM1.916e-4938.40Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA2.503e-4938.40Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
GADB_DICDI5.576e-4940.71Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCEB_LISIN1.737e-4235.66Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO3.870e-4235.66Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEC_LISMO6.602e-4236.99Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN2.509e-4136.59Probable glutamate decarboxylase gamma OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_A04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934056 ID=CK934056; Name=CK934056; organism=Citrus sinensis; type=EST; length=937bp
GGGGGAAGAGTGAAGAGCTGAGTTGCCATCAAAAGTCAAAACTCACTCAC
TCACTCACTCTCAATCACTCTCTTTCCTTTGTATCTCAGCAATTTCTATT
CATTTCTCTCAGACTCAAGAGTCTCTCTTCTCTGCACAAAACAAAAACAA
AAATGGTGATTTCAACAACAGAAACAGACTCCAGGGAGATTTTGAACTCC
ACATTTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCC
AGATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGC
TGATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACT
TGGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAA
CTATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGT
GTGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAG
ACTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGGGGCAATAATGCTTGC
TGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCA
AACCCTATGATAAGCCCAATATAGCCACTGGAGCTAATGTGCAGGTATGC
TGGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACT
GGAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAG
ATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGA
GAATTTGAGGATGTTAAGCTTCTTCATGACCTCCTCACCAAAAAGAATGA
GGAGACCGGTTGGGACACCCCCATTCATGTTGATGCTGCTAGCGGCGGAT
TTATTGCTCCTTTTCTCTATCCAGACCTTGAATGGGA
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