CK934056

Overview
NameCK934056
Unique NameCK934056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934056_ssr41 microsatellite CK934056_ssr41:41..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1550 contig Csv1_Contig1550:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.774e-40
Identity = 91/231 (39.39%), Postives = 130/231 (56.28%), Query Frame = 3
Query:  237 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYDKPNIATGANVQVCWEKFARYF-XXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLT----KKNEETGWDTPIHVDAASGGFIAPF 914
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+             IML GLA K++W+ + K  GK   KPNI   +  QV  EKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+ + D+L+    K  + +  D PIH D ASGGFI PF
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPF 287          
BLAST of CK934056 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.749e-37
Identity = 83/237 (35.02%), Postives = 128/237 (54.01%), Query Frame = 3
Query:  231 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKXXXXXXXXXXXXXIMLAGLAFKRKWQQKRKEQGKPYD--KPNIATGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLTKKNEETGWDTPIHVDAASGGFIAPFLYPDLEW 935
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +              ML G+A K +W+    + G      KP++   +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T TG+F+D+  L+DL+   N     +  IHVD ASG    PF+ P LEW
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLVEDYNNTHDNEVVIHVDGASGAMFTPFVEPGLEW 257          
The following BLAST results are available for this feature:
BLAST of CK934056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_YEAST2.774e-4039.39Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEA_LISMO3.749e-3735.02Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_A04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934056 ID=CK934056; Name=CK934056; organism=Citrus sinensis; type=EST; length=937bp
GGGGGAAGAGTGAAGAGCTGAGTTGCCATCAAAAGTCAAAACTCACTCAC
TCACTCACTCTCAATCACTCTCTTTCCTTTGTATCTCAGCAATTTCTATT
CATTTCTCTCAGACTCAAGAGTCTCTCTTCTCTGCACAAAACAAAAACAA
AAATGGTGATTTCAACAACAGAAACAGACTCCAGGGAGATTTTGAACTCC
ACATTTGCTTCAAGATATGTCCGTGCTGCTATTCCCAGATTCAAGATGCC
AGATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGC
TGATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACT
TGGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAA
CTATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGT
GTGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAG
ACTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGGGGCAATAATGCTTGC
TGGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCA
AACCCTATGATAAGCCCAATATAGCCACTGGAGCTAATGTGCAGGTATGC
TGGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACT
GGAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAG
ATGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGA
GAATTTGAGGATGTTAAGCTTCTTCATGACCTCCTCACCAAAAAGAATGA
GGAGACCGGTTGGGACACCCCCATTCATGTTGATGCTGCTAGCGGCGGAT
TTATTGCTCCTTTTCTCTATCCAGACCTTGAATGGGA
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