CK934058

Overview
NameCK934058
Unique NameCK934058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECOHS (Triosephosphate isomerase OS=Escherichia coli O9:H4 (strain HS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECODH (Triosephosphate isomerase OS=Escherichia coli (strain K12 / DH10B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECO8A (Triosephosphate isomerase OS=Escherichia coli O8 (strain IAI1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECO7I (Triosephosphate isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECO5E (Triosephosphate isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
[Close]
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ECO57 (Triosephosphate isomerase OS=Escherichia coli O157:H7 GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 104/245 (42.45%), Postives = 136/245 (55.51%), Query Frame = 1 
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+   V ++VS L +                       +    S   + AQN  +   GAFTGE SA ML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET    E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPAQAQ VH  +R  +   V A +A    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+A
Sbjct:    6 VMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIA-KVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAA 249
The following BLAST results are available for this feature:
BLAST of CK934058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECOLC6.661e-4342.45Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL66.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O6 G... [more]
TPIS_ECOL56.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK16.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O1:K... [more]
TPIS_ECOHS6.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O9:H... [more]
TPIS_ECODH6.661e-4342.45Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECO8A6.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O8 (... [more]
TPIS_ECO7I6.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O7:K... [more]
TPIS_ECO5E6.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO576.661e-4342.45Triosephosphate isomerase OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934058 ID=CK934058; Name=CK934058; organism=Citrus sinensis; type=EST; length=844bp
GGGGACAAACAGGGTGTGAGAAAACAAACAGGGTGTTGATTTCTCGTATT
TTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGTCGTCATGG
CCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACATCTGAG
GAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTTCCTTCTGA
GGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGG
TCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGG
GTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGT
CAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTC
TTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTT
TCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAATAGCG
AGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCG
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCNNNNAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAG
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