CK934058

Overview
NameCK934058
Unique NameCK934058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 97/248 (39.11%), Postives = 125/248 (50.40%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 837
            +R+  + GNWK NG    + +I +     +                        L  S   +  QNC     GA TG +SAEML +  +  VI+GHSERR  L+ES+  V  KV  A   GL  I CVGET E R++G  V VV  Q      +     N+V+AYEPVWAIGTG+  TP     +H  +R  L+    AE A   RI+YGGSV   N   L A  DVDG LVGGASLK  +F+ I ++
Sbjct:    4 SRRVLIAGNWKMNGLKSSLAEIEALAAGYDGDLKAKLDLLVCPPATLLISAAERLAGSGVQLGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGETAEERDAGEAVGVVTRQVHQSLPEGCTASNLVIAYEPVWAIGTGRTPTPEDVANIHGTIRSVLRSQFGAE-ADGIRILYGGSVKPDNAATLMAVADVDGALVGGASLKAADFLAIARA 250          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBK (Triosephosphate isomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 93/238 (39.08%), Postives = 124/238 (52.10%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            R   + GNWK N T +E  ++V  L                         + V  S+  V AQN    + GA+TGE++ +ML  L + +VI+GHSERR   NE+++ V  KV  A    L  I C GE+LE RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +KD     VA   RI YGGSV     K   A+ ++DG LVGGASLK
Sbjct:    2 RTAIIAGNWKMNKTVKEAVELVKELKPL-VKDAKCDVVVCPTYVCLPAVLEEVKGSNIKVGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGESVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLK 238          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_RHOPB (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 94/238 (39.50%), Postives = 124/238 (52.10%), Query Frame = 1
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR------SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            + GNWK NG    + ++   L  A                      + +        + F + AQ+C  R  GA TG++SAEML +     VI+GHSERRA   ES+  V +K   A   GL  I CVGET   R++G T+ VV  Q        +   N V+AYEPVWAIGTG+  T A  ++VH  +RK L   +S E  +  RI+YGGSV  +N +EL A  DV+G LVGGASLK
Sbjct:    9 IAGNWKMNGLRASLSELKLMLEGAGKLSATADLLICPPATLVAAFAQKLAADTGSRSNSFAIGAQDCHPRASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDALVREKAEAAWRAGLVAIICVGETQGQRDAGQTLDVVGTQLAGSLPDGATAANTVVAYEPVWAIGTGRTPTVADVEQVHGFIRKSLTQRMSGE-GSKVRILYGGSVKPSNAQELMAVADVNGALVGGASLK 245          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 90/243 (37.04%), Postives = 132/243 (54.32%), Query Frame = 1
Query:  121 GNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 840
            GNWK NG+S  +K++   +++                          L  +  V  QN      GA+TGE+SAEML ++   ++++GHSERR+L  E++  V  K+   +   +  + C+GE+LE R+ G    V+  Q   I E +S      V++AYEPVWAIGTG VA+  Q QE H  +R  L   V   +A + +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:    7 GNWKMNGSSASIKELCKGISEVNYNSEKVAVAVFPSSVYVKEVLAQ-LPKEIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIRS-LVAKVDENLAKNMKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKASEFNEIINQA 247          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_DESDG (Triosephosphate isomerase OS=Desulfovibrio desulfuricans (strain G20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 85/187 (45.45%), Postives = 116/187 (62.03%), Query Frame = 1
Query:  274 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNW------DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            F+  AQN +    GA+TGE+S  M+V+    W + GHSERR++L ES+ FVG K A+ L +GL V+ C+GETLE RE G    V+  Q   ++E +S        + + +AYEPVWAIGTGKVA  A+    HA +R  L++ + A  A S RI+YGGSV   N   + +  +VDG LVGGASL+ E
Sbjct:   60 FYCGAQNVYPADEGAYTGEISPGMIVSTGAAWALTGHSERRSVLGESSAFVGQKTAFCLEKGLNVVLCIGETLEEREGGQLEKVLRGQ---LSEGLSGVPAGIAPERLAIAYEPVWAIGTGKVAGTAEIAATHAVVRGMLRELLPA-AADSMRILYGGSVKPDNAAAIISLDNVDGVLVGGASLQAE 242          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 91/248 (36.69%), Postives = 130/248 (52.42%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 837
            RK  + GNWK + T +E  + V  +                         ++   ++  + AQN      GAFTGE+S   L +L + +VI+GHSERR +  E+++ V  KV  A   GL  I C GETLE RES  T  VV  Q +   E ++      VV+AYEP+WAIGTGK +T   A  V   +R+ + +  S E A + RI YGGSV   N     A+  +DG LVGGASL+P+ F+ ++++
Sbjct:    2 RKPIIAGNWKMHKTLKEALQFVEEVKHEVPSNEQVDAVVCAPALFLAHLVEATKGTNVKIGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGETLEERESNRTNEVVRVQVEKALEGLTEEQVKQVVIAYEPIWAIGTGKSSTAEDANNVCGYIRQVIANKFSQEAANAVRIQYGGSVKPENIAAFLAEEHIDGALVGGASLQPQSFLQLVEA 249          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.624e-36
Identity = 95/252 (37.70%), Postives = 135/252 (53.57%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFH---VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            R+  V GNWK NG+   V ++++ LN AE                     + ++    +   + AQN  +   GAFTG++S EML +     +I+GHSERR   NES++F+  K  +    GL  + C+GE+    E+G T AV A Q  A+ +   +   +  ++AYEP+WAIGTGK AT   AQ +HA +R  +     A VAA   I YGGSV   N +   +QPD+DG LVGGASL  + F  I K+A
Sbjct:    2 RRPVVMGNWKLNGSKAMVTELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDLNNSGAFTGDMSPEMLKDFGATHIIIGHSERREYHNESDEFIAKKFNFLKENGLTPVFCIGESEAQNEAGETEAVCARQINAVIDTYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRALIAAKDEA-VAAQVIIQYGGSVKPENAEAYFSQPDIDGALVGGASLDAKSFAAIAKAA 251          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_VIBMA (Triosephosphate isomerase OS=Vibrio marinus GN=tpiA PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.624e-36
Identity = 96/248 (38.71%), Postives = 132/248 (53.23%), Query Frame = 1
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR---SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 840
            V GNWK NG+ E V  +++ LN AE                     +  L    S   + AQN  +   GAFTG++S  ML       +I+GHSERR    ES++FV  K A+    GL  + C+GE+    E+G T+AV A Q  A+   + +   +  ++AYEP+WAIGTGK AT   AQ +HA++R  + +  S  VA +  I YGGSV   N     AQPD+DG LVGGA+L  + F  I K+A
Sbjct:    6 VMGNWKLNGSKEMVVDLLNGLN-AELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAA 251          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.039e-36
Identity = 89/188 (47.34%), Postives = 111/188 (59.04%), Query Frame = 1
Query:  280 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 834
            + AQN      GA+TGE++ +ML  L   +VILGHSERR    E++  +  K   AL+ GLK I CVGE    R+SG   +VV  Q +     +S      VV+AYEPVWAIGTG  ATPA AQ +HA +R  L        A +  I YGGSV   N  EL AQPD+DG LVGGASLK  +FI I++
Sbjct:   61 LGAQNMHYEAKGAYTGEIAPQMLKELGCSYVILGHSERRQYFGETDALINRKAHAALANGLKPIVCVGEVKAERDSGQAESVVVGQLRGSLAGLSAEQLRGVVIAYEPVWAIGTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGSVKPDNVDELMAQPDIDGALVGGASLKAADFIRIVR 248          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 93/255 (36.47%), Postives = 128/255 (50.20%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 834
            M+RK F+ GNWK N   EE K  V  +                              S+  VAAQNC+    GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + G+  I C GE+LE  E+G     V  Q  A      AE+++     V+AYEP+WAIGTGK A+   AQ++   +R  +  +   EVA   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:    1 MSRKPFIAGNWKMNKNPEEAKAFVEAVASKLPSSDLVEAGIAAPALDLTTVLAVAKGSNLKVAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
The following BLAST results are available for this feature:
BLAST of CK934058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_XANP22.711e-3639.11Triosephosphate isomerase OS=Xanthobacter autotrop... [more]
TPIS_CLOBK2.711e-3639.08Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_RHOPB3.540e-3639.50Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_FRAP23.540e-3637.04Triosephosphate isomerase OS=Francisella philomira... [more]
TPIS_DESDG3.540e-3645.45Triosephosphate isomerase OS=Desulfovibrio desulfu... [more]
TPIS_ANOFW3.540e-3636.69Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_VIBPA4.624e-3637.70Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_VIBMA4.624e-3638.71Triosephosphate isomerase OS=Vibrio marinus GN=tpi... [more]
TPIS_HERA26.039e-3647.34Triosephosphate isomerase OS=Herpetosiphon auranti... [more]
TPIS_STRR67.887e-3636.47Triosephosphate isomerase OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934058 ID=CK934058; Name=CK934058; organism=Citrus sinensis; type=EST; length=844bp
GGGGACAAACAGGGTGTGAGAAAACAAACAGGGTGTTGATTTCTCGTATT
TTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGTCGTCATGG
CCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACATCTGAG
GAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTTCCTTCTGA
GGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGG
TCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGG
GTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGT
CAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTC
TTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTT
TCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAATAGCG
AGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCG
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCNNNNAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAG
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