CK934058

Overview
NameCK934058
Unique NameCK934058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_STRCO (Triosephosphate isomerase OS=Streptomyces coelicolor GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 89/188 (47.34%), Postives = 116/188 (61.70%), Query Frame = 1
Query:  286 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGS----TVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 834
            AQ+     GGA+TGE+S  ML  L   +V +GHSERR    E+++ V  KV  A   GL  I CVGE L+ RE+G+    T+A V    K +A + +  ++VV+AYEPVWAIGTGKV     AQEV A +R  L +  S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I++
Sbjct:   69 AQDISAHDGGAYTGEISGPMLAKLKCTYVAVGHSERRQYHAETDEIVNAKVKAAYKHGLTPILCVGEELDVREAGNHVEHTLAQVEGGLKDLAAEQA--ESVVIAYEPVWAIGTGKVCGADDAQEVCAAIRGKLAELYSQELADKVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDSDEFVKIVR 254          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 95/251 (37.85%), Postives = 130/251 (51.79%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEV----KKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLK-VIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 831
            RK F+ GNWK + TS E     K+IV  +                         K    S+  + AQN      GA T E+S  ML+   + +VILGHSE R  L ++++ +  K+   L    K +I C+GETL  RE+  T+ VV  Q +     +S  D   ++LAYEPVWAIGTGK AT  +AQEVH  +R  ++   S   A    I YGGSVN  N   L  + D+DG L+GGASLK + F++I+
Sbjct:    2 RKMFLAGNWKMHYTSVEAAGVAKQIVDGVQNINDDVVIMITPAFTSLCKVCEVTKG---SNVLLGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDNVGGLMGENDIDGALIGGASLKADSFLNIV 249          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 95/238 (39.92%), Postives = 123/238 (51.68%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            MARK    GNWK NGT E + ++   L Q +                     ++    D  +  Q+C  +  GA TG++SA+ML +    +VI+GHSERRA   E +  V  K   A + GL  + C+GETLE RE+G+T+ VV  Q           +N V+AYEPVWAIGTGKV T  Q  EVH  LR  L     A       ++YGGSV   N  E+    +VDG LVGGASLK
Sbjct:    1 MARKL-AAGNWKMNGTGEHLAEL-ENLAQGDLPEGVDVLICPPATLISRAADRA---GDIAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTAENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGA-AGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLK 232          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_RALEH (Triosephosphate isomerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 88/177 (49.72%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  286 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            AQ+      GAFTGEVSA M+      +V++GHSERR    E++  V  K   AL  G+  + CVGETL  RE+G T AVV  Q +A+  A  +     VVLAYEPVWAIGTGK AT  QAQ VHA LR  +     A VA    I+YGGSV   N  EL +  D+DG L+GGASLK
Sbjct:   60 AQDVSAEARGAFTGEVSASMVGEFGCTYVLVGHSERRTYHGETDQTVAAKALRALEFGIVPVVCVGETLAQREAGETEAVVGRQLQAVLDALTVEQLSRVVLAYEPVWAIGTGKTATSEQAQAVHAFLRGQVAAR-DAGVAERMAILYGGSVKPDNAAELFSMTDIDGGLIGGASLK 235          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 97/249 (38.96%), Postives = 125/249 (50.20%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAI-----AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            M RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TGE+S   L  L   + ++GHSERR    E+++ V  K   AL  GL  I C+GE LE RE+G+ V       +       AE+I+     V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  SA+VAA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:    1 MTRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDRVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQ---TVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 94/236 (39.83%), Postives = 120/236 (50.85%), Query Frame = 1
Query:  115 VGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTK-AIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            + GNWK NG     + ++  L  A                       SVL  S   V AQ+C + + GA TG++SAEMLV     WVILGHSERR    E ++ V +KV  A   GL  I CVGET + R SG    +V  Q K ++ +  +   N V+AYEPVWAIGTG+ AT      +HA +R+ L      E     RI+YGGSV   N   L   P+V G LVGGASL  +
Sbjct:    5 IAGNWKMNGLRSTSESLLQALRDAAPHALRNCDMLICPPATLIAQAASVLAGSGIEVGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQF-GEAGRGVRILYGGSVKPENAASLLRVPEVGGALVGGASLSAQ 239          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_SILPO (Triosephosphate isomerase OS=Silicibacter pomeroyi GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.720e-35
Identity = 98/248 (39.52%), Postives = 124/248 (50.00%), Query Frame = 1
Query:  103 RKFFVGGNWKCNGTSEEVKKI--VSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 840
            R+    GNWK NGT   +  +  ++  + A                       S +R    +  Q+C     GA TG++SA ML +     VILGHSERRA   E++  V DK   AL  GL  I C+GETL  RE+G T+ VV  Q         +   VV+AYEPVWAIGTG V T  Q  EVH  LR+ L     +E A + R++YGGSV   N  E+ A  +VDG LVGGASL       I SA
Sbjct:    2 RRKLAAGNWKMNGTGAALDALEAIAGAHSAAAVDLLICPPATLLYRAAQVAEGSRVR----IGGQDCHAVTAGAHTGDISAMMLADAGASAVILGHSERRADHGETDAQVCDKARAALEAGLIAIICIGETLAQREAGQTLDVVCAQLAGSVPDGIDGTRVVVAYEPVWAIGTGLVPTLEQIAEVHDTLRQQLIGRFGSETAEAIRLLYGGSVKPGNAAEIFAVSNVDGALVGGASLTAADFSPIVSA 245          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.720e-35
Identity = 92/239 (38.49%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  100 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRS--DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            A +  + GNWK NG   ++ +  + L  A                      + +      F V AQ+C     GA TG++SAEMLV+     +I+GHSERRA   E++  V  K   A   G   I CVGET   R++G T+ VV  Q        +  +N V+AYEPVWAIGTG   T    ++VH  +R  L      E  A+ RI+YGGSV  +N KEL A P+V+G LVGGASLK
Sbjct:    4 AIRALIAGNWKMNGLKAQLAEFEAMLAGAPALADKADLLVCPPATLLHAFGQKLGNGARSFAVGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGE-GAAVRILYGGSVKPSNAKELMAVPEVNGALVGGASLK 241          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_NATTJ (Triosephosphate isomerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.720e-35
Identity = 93/242 (38.43%), Postives = 132/242 (54.55%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTK-AIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 816
            MAR   + GNWK N    E ++ V+ + + +                      +         AQN +  + GAFTGEVS +ML  L + +VI+GHSERR +  ES++ V  KV  AL  G+K I CVGE+   R  G T+ VV  Q K A++E +S+   NVV AYEPVWAIG+GK AT   A++V   +R  + + +++ VA    ++YGGSV   N +E   Q +++G LVGG SL  E
Sbjct:    1 MARTI-IAGNWKMNHGPRETREFVAGMKE-KYQTPPAVETVICPPFVSISDLVNESPEWLKTGAQNVYFEESGAFTGEVSPKMLAELGVEYVIIGHSERRNIFAESDEEVNKKVRIALKYGIKPIICVGESDAQRNEGKTLEVVENQVKSALSEVVSDTLQNVVFAYEPVWAIGSGKAATGEDAEQVCKHIRSVISE-LNSSVADDIPVLYGGSVKPENLEEFMDQDNINGALVGGKSLVAE 239          
BLAST of CK934058 vs. ExPASy Swiss-Prot
Match: TPIS_MYCVP (Triosephosphate isomerase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.720e-35
Identity = 95/253 (37.55%), Postives = 125/253 (49.41%), Query Frame = 1
Query:   97 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLE*RESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASXRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 837
            M+RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TGE+S   L  L   + ++GHSERR   NE +  V  K A A   GL  I C+GE L+ RE+G+ V     Q +     +S       V+AYEPVWAIGTG+VA+ A AQEV   +R  L +  S E+AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E   ++ +
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHNEDDALVAAKAAAAFKHGLTPIICIGEHLDVREAGNHVEYNVNQLRGSLAGLSAEQIGQAVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASPELAAGVRVLYGGSVNAKNVGEIVGQADVDGALVGGASLDGEQFSMLSA 253          
The following BLAST results are available for this feature:
BLAST of CK934058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRCO5.112e-3547.34Triosephosphate isomerase OS=Streptomyces coelicol... [more]
TPIS_BORHD5.112e-3537.85Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_SILST6.677e-3539.92Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_RALEH6.677e-3549.72Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_MYCGI6.677e-3538.96Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_GRABC6.677e-3539.83Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_SILPO8.720e-3539.52Triosephosphate isomerase OS=Silicibacter pomeroyi... [more]
TPIS_RHOP58.720e-3538.49Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_NATTJ8.720e-3538.43Triosephosphate isomerase OS=Natranaerobius thermo... [more]
TPIS_MYCVP8.720e-3537.55Triosephosphate isomerase OS=Mycobacterium vanbaal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934058 ID=CK934058; Name=CK934058; organism=Citrus sinensis; type=EST; length=844bp
GGGGACAAACAGGGTGTGAGAAAACAAACAGGGTGTTGATTTCTCGTATT
TTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGTCGTCATGG
CCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGACATCTGAG
GAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTTCCTTCTGA
GGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCTTCCTTTGG
TCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAAATTGCTGG
GTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAGATGCTTGT
CAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAGAAGAGCTC
TTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTTATGCACTT
TCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTGGAATAGCG
AGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAAAGCAATCG
CAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTTATGAGCCAGTT
TGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAGGCTCAGGAAGT
CCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAGTGCTGAAGTTG
CAGCATCNNNNAGAATCATCTACGGAGGTTCTGTAAATGGAGCAAATTGC
AAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTGGTTGGTGGAGC
TTCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAG
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