CK934060

Overview
NameCK934060
Unique NameCK934060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934060_ssr153 microsatellite CK934060_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11109 contig Csv1_Contig11109:158..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_NEUCR (Alternative oxidase, mitochondrial OS=Neurospora crassa GN=aod-1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.966e-38
Identity = 87/224 (38.84%), Postives = 130/224 (58.04%), Query Frame = 3
Query:  288 HAWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDL------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG-----SIENVPAPAIAIDYWRLPK-DATLQDVITVIRA 869
            H W     +++  + +H  P T  D +A++ V++ R  TD+                          + ++  R + LE++A VPGMV GML HL SLR+ +   GWI+ LLEE+ NERMHL+T + + +P    + L+L  QGVFFNA F+ YL+SPK+ HR VGYLEEEA+H+YT  +++I+ G     S E    P +A+ YWR+P+   T++D+I  IRA
Sbjct:   87 HGWT--EEEMTSVVPEHRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLLTFMKMCEPGLLMKTLILGAQGVFFNAMFLSYLISPKITHRFVGYLEEEAVHTYTRCIREIEEGHLPKWSDEKFEIPEMAVRYWRMPEGKRTMKDLIHYIRA 308          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_MAGGR (Alternative oxidase, mitochondrial OS=Magnaporthe grisea GN=AOX1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.179e-38
Identity = 74/151 (49.01%), Postives = 106/151 (70.20%), Query Frame = 3
Query:  435 RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPK-DATLQDVITVIRA 869
            R + LE++AAVPGMV GML HL SLR+ +   GWI+ LLEEA NERMHL+T + + +P W  ++L++  QGV+FNA FV YL+SPK+ HR VGYLEEEA+H+YT  +++++ G +          P IA+ YW +P+   T++D++  IRA
Sbjct:  151 RFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGWLMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSDPKFQVPEIAVSYWGMPEGHRTMRDLLLYIRA 301          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_MONFR (Alternative oxidase, mitochondrial OS=Monilinia fructicola GN=AOX1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.968e-37
Identity = 87/211 (41.23%), Postives = 123/211 (58.29%), Query Frame = 3
Query:  336 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPK-DATLQDVITVIRA 869
            H  P  F D+VA   V+ LR  TD                              +R++  R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T + + +P  + R ++L  QGVFFN+FF+ YL SPK  HR VGYLEEEA+ +YT  ++D+++G +      N  AP +AI+YW +P+   +++D++  IRA
Sbjct:   94 HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKTASDSNAVTATKPYQMSERKWLIRYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGLFMRTMILGAQGVFFNSFFLCYLFSPKTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWADPNFKAPDLAIEYWGMPEGHRSMRDLLYYIRA 304          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_TRYBB (Alternative oxidase, mitochondrial OS=Trypanosoma brucei brucei GN=AOX PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 7.479e-37
Identity = 85/188 (45.21%), Postives = 110/188 (58.51%), Query Frame = 3
Query:  336 HHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGC--------RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSIENV--PAPAIAIDYWRLPKDATLQDVITVIRA 869
            H  P   +D +AYR+V+  R   D F   R+G         R + LETVA VPGMVGGML HL SLR      GWI  LL EAENERMHLMT + L +P    R+ ++  Q + +    V Y++SP+  HR VGYLEEEA+ +YT  ++ ID G +       P +A  YW L K+AT +D+I VIRA
Sbjct:   77 HKKPNGLVDTLAYRSVRTCRWLFDTFSLYRFGSITESKVISRCLFLETVAGVPGMVGGMLRHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQPGLPLRVSIIITQAIMYLFLLVAYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEGRLRPTKNDVPEVARVYWNLSKNATFRDLINVIRA 264          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_BOTFU (Alternative oxidase, mitochondrial OS=Botryotinia fuckeliana GN=aox PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.666e-36
Identity = 84/211 (39.81%), Postives = 124/211 (58.77%), Query Frame = 3
Query:  336 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI-----ENVPAPAIAIDYWRLPK-DATLQDVITVIRA 869
            H  P  F D+VA   V+ LR  TD                              +R++  R + LE+VA VPGMV GML HL+SLR  +   GWI+ LLEEA NERMHL+T + + +P  + R ++L  QGVFFN+FF+ YL SP+  HR VGYLEEEA+ +YT  ++D+++G +      +  AP +A++YW +P+ + +++D++  IRA
Sbjct:   97 HRKPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLIRYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMYEPGIFMRTMILGAQGVFFNSFFLCYLFSPRTCHRFVGYLEEEAVLTYTLSIQDLENGHLPKWADPDFKAPDLAVEYWGMPEGNRSMRDLLYYIRA 307          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_YARLI (Alternative oxidase, mitochondrial OS=Yarrowia lipolytica GN=AOX PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.269e-36
Identity = 84/199 (42.21%), Postives = 116/199 (58.29%), Query Frame = 3
Query:  336 HHVPTTFLDKVAYRTVKLLRIPTDL------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSG---SIENVPAPAIAIDYWRLPKDATLQDVITVIRA 869
            H    TF D+VA R + L+RI  DL                     R++  R + LE++A VPGMV GM+ HL SLR  +    WI++L+EEA NERMHL+T + L KP    R  +L  Q +F+N FF+ YL+SP   HR VGYLEEEA+ +YT  L+DID+G    + ++  P IA  YW +  D T++D+I  +RA
Sbjct:  101 HRKTETFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFLKLQKPSVQMRTGLLIGQIIFYNLFFISYLISPATCHRFVGYLEEEAVITYTRCLEDIDAGRLPELASMEVPDIARTYWHMEDDCTMRDLIQYVRA 299          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_PICST (Alternative oxidase, mitochondrial OS=Pichia stipitis GN=STO1 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 5.360e-35
Identity = 82/206 (39.81%), Postives = 117/206 (56.80%), Query Frame = 3
Query:  333 KHHVPTTFLDKVAYRTVKLLRIPTDL----------------FFQRRYGC-------RAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYW-RLPKDATLQDVITVIRA 869
            +H  P TF DK+A+R ++L+R   D                 F   RY         R + LE++A VPG V   + HL SLR  +    WI+ LL+EA NERMHL+T + + KP W+ R ++   QGVF N FF+ YL +PK  HR VGYLEEEA+ +YT ++ ++ SG +   EN+  P IA  YW  L +++++ D+I  IRA
Sbjct:   97 EHRPPRTFGDKMAFRGIELVRGSFDFVTGYKKPKTQADIDSGFKGTRYEMTEGKWLTRCIFLESIAGVPGAVASFIRHLHSLRLLKRDKAWIETLLDEAFNERMHLLTFIKIGKPSWFTRTIIYVGQGVFCNLFFLFYLANPKYCHRFVGYLEEEAVSTYTHFVHELQSGKLPKFENIKIPTIAWQYWPELTENSSMLDLILRIRA 302          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX_HANAN (Alternative oxidase, mitochondrial OS=Hansenula anomala GN=AOX1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 81/205 (39.51%), Postives = 112/205 (54.63%), Query Frame = 3
Query:  336 HHVPTTFLDKVAYRTVKLLRIPTDL-----------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGSI---ENVPAPAIAIDYWR-LPKDATLQDVITVIRA 869
            H  P T  DK+A R VK  R   D                          + ++  R + LE+VA VPGMV   + HL SLR  +    WI+ LL+EA NERMHL+T + +  P W+ R ++   QGVF N FF++YL+ P+  HR VGYLEEEA+ +YT  +KDIDS  +   ++V  P I+  YW  L + +T +D+I  IRA
Sbjct:   81 HREPKTIGDKIADRGVKFCRASFDFVTGYKKPKDVNGMLKSWEGTRYEMTEEKWLTRCIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKIGNPSWFTRFIIYMGQGVFANLFFLVYLIKPRYCHRFVGYLEEEAVSTYTHLIKDIDSKRLPKFDDVNLPEISWLYWTDLNEKSTFRDLIQRIRA 285          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX2_CANAL (Alternative oxidase 2, mitochondrial OS=Candida albicans GN=AOX2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.906e-32
Identity = 76/204 (37.25%), Postives = 113/204 (55.39%), Query Frame = 3
Query:  336 HHVPTTFLDKVAYRTVKLLRIPTDL---------------------FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDI----DSGSIENVPAPAIAIDYW-RLPKDATLQDVITVIRA 869
            H    T  DK+++R+++ +R   DL                       + ++  R + LE+VA VPG V G L HL SLR  +    WI+ LL+EA NERMHL+T + + KP W+ R ++   QGVF N FF+LYLL+P+  HR VGYLEEEA+ +Y+  L ++       + E +  P +A+ YW  L   ++ +D+I  IRA
Sbjct:  107 HRETKTLGDKISFRSIQFMRQCFDLVTGYAVPKTNNPDEFKGTRWEMTEGKWLTRCIFLESVAGVPGSVAGFLRHLHSLRMLRRDKAWIETLLDEAYNERMHLLTFIKIGKPSWFTRSIIYVGQGVFTNVFFLLYLLNPRYCHRFVGYLEEEAVRTYSHLLDELAVPGKLPAFETMKIPEVAVQYWPELTPKSSFKDLILRIRA 310          
BLAST of CK934060 vs. ExPASy Swiss-Prot
Match: AOX1_CANAL (Alternative oxidase 1, mitochondrial OS=Candida albicans GN=AOX1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.461e-32
Identity = 65/156 (41.67%), Postives = 99/156 (63.46%), Query Frame = 3
Query:  417 QRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVGLVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIDSGS----IENVPAPAIAIDYW-RLPKDATLQDVITVIRA 869
            + ++  R + LE++A VPG V G + HL SLR       WI+ L +EA NERMHL+T + + KP W+ R ++   QGVF N FF++YL++P+  HR VGYLEEEA+ +YT  + ++D  +     + +P P IA+ YW  L  +++ +D+I  IRA
Sbjct:  169 EEKWMTRCIFLESIAGVPGSVAGFVRHLHSLRMLTRDKAWIETLHDEAYNERMHLLTFIKIGKPSWFTRSIIYIGQGVFTNIFFLVYLMNPRYCHRFVGYLEEEAVRTYTHLIDELDDPNKLPDFQKLPIPNIAVQYWPELTPESSFKDLILRIRA 324          
The following BLAST results are available for this feature:
BLAST of CK934060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AOX_NEUCR3.966e-3838.84Alternative oxidase, mitochondrial OS=Neurospora c... [more]
AOX_MAGGR5.179e-3849.01Alternative oxidase, mitochondrial OS=Magnaporthe ... [more]
AOX_MONFR1.968e-3741.23Alternative oxidase, mitochondrial OS=Monilinia fr... [more]
AOX_TRYBB7.479e-3745.21Alternative oxidase, mitochondrial OS=Trypanosoma ... [more]
AOX_BOTFU1.666e-3639.81Alternative oxidase, mitochondrial OS=Botryotinia ... [more]
AOX_YARLI8.269e-3642.21Alternative oxidase, mitochondrial OS=Yarrowia lip... [more]
AOX_PICST5.360e-3539.81Alternative oxidase, mitochondrial OS=Pichia stipi... [more]
AOX_HANAN2.252e-3339.51Alternative oxidase, mitochondrial OS=Hansenula an... [more]
AOX2_CANAL1.906e-3237.25Alternative oxidase 2, mitochondrial OS=Candida al... [more]
AOX1_CANAL9.461e-3241.67Alternative oxidase 1, mitochondrial OS=Candida al... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934060 ID=CK934060; Name=CK934060; organism=Citrus sinensis; type=EST; length=870bp
GGGGTAGCGATGTCGGTGATGCGAGGGCTGATTAACGGCGGGAAGCACAG
TATCGGCTACGCAAGGACGGCGGTGAGATGTCATCCGAACGTTTGGGACG
GAGATGACATGCCGTTATTGGGGTTGAGAATGATGGTGATGATGAGTAGT
TATTCTTCTTCTTCGGAATCGGTGCCTGAGAAAGTGAAGGAGAAAGGAGA
GAACGGAATTGTACCGTCGAGTTATTGGGGTATTTCGAGGCCAAAGATCA
CTAGAGAGGATGGCAGTCCATGGCCTTGGAATTGTTTCATGCTTGGGAAA
CTTATCGGGCAGATTTATCAATTGATTTGAAGAAGCACCATGTGCCCACA
ACCTTCCTTGACAAAGTTGCTTACCGGACGGTCAAACTCCTCCGAATTCC
CACTGATTTGTTTTTTCAGAGACGATATGGATGTCGTGCAATGATGCTGG
AAACAGTGGCGGCTGTACCTGGAATGGTTGGAGGAATGTTGCTACACCTC
AAGTCTCTGCGTAAGTTCCAGCATAGTGGTGGTTGGATCAAAGCTCTGCT
TGAAGAAGCAGAGAATGAGAGGATGCATCTGATGACCATGGTGGGGCTTG
TGAAGCCCAAATGGTATGAGAGGATGCTTGTTCTGACTGTGCAGGGTGTC
TTTTTCAATGCATTCTTTGTGCTTTATCTACTCTCACCTAAACTGGCTCA
TAGAGTTGTTGGCTACTTGGAGGAGGAGGCTATACACTCTTACACTGAAT
ATCTCAAGGATATTGATAGTGGATCTATTGAAAATGTTCCAGCCCCTGCT
ATTGCTATTGACTATTGGAGGTTACCTAAGGATGCTACACTNCAGGATGT
TATTACTGTTATTCGTGCTG
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