CK934072

Overview
NameCK934072
Unique NameCK934072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_SYNR3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain RCC307) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 56/113 (49.56%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLK-----RGGNSRFLKTAAYGHFGREDPDFTWEVV 324
            TKVDRS AY  R  AK++VA+GLAR+  VQ+SYAIGV +P+S+ V+++ T    + E+  +V  NFD RPG I  N  L+     RGGN  + + AAYGHFGR D +  WE V
Sbjct:  287 TKVDRSAAYAARFVAKALVAAGLARKAEVQLSYAIGVAKPVSILVESFGTSSHSNDELTELVNANFDLRPGAIIENFKLRNLPQQRGGNF-YREVAAYGHFGRSDLNLPWEDV 398          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_SHESH (S-adenosylmethionine synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 318
            +KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++T+ TGK+ ++ ++ +V+++FD RP  +   LDL R     +  TAAYGHFGR   +F WE
Sbjct:  269 SKVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEALIALVRQHFDLRPYGLTEMLDLAR---PIYQSTAAYGHFGRN--EFPWE 369          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_SHELP (S-adenosylmethionine synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 55/106 (51.89%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 318
            +KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ TGK+ ++ ++ +V+++FD RP  +   LDL R     +  TAAYGHFGR   +F WE
Sbjct:  269 SKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIGLVRQHFDLRPYGLTEMLDLAR---PIYKATAAYGHFGRN--EFPWE 369          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_SALHS (S-adenosylmethionine synthetase OS=Salmonella heidelberg (strain SL476) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 56/106 (52.83%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 318
            +KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ T K+P ++++ +V+E FD RP  +   LDL    +  + +TAAYGHFGRE  +F WE
Sbjct:  269 SKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPVEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_PSEFS (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain SBW25) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD----------FTWE 318
            +KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++T+ TGKI D +I+++V+E FD RP  I   LDL    +  + +TAAYGHFGR              FTWE
Sbjct:  270 SKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIVKLVREIFDLRPYAITTMLDLL---HPMYQETAAYGHFGRTPAQKTVGDDTFTTFTWE 382          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_PSEF5 (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED----------PDFTWE 318
            +KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++T+ TGKI D +I+++V+E FD RP  I   LDL    +  + +TAAYGHFGR              FTWE
Sbjct:  270 SKVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIIKLVREVFDLRPYAITTMLDLL---HPMYQETAAYGHFGRAPQTKTVGDDTFTTFTWE 382          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_PROMS (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain AS9601) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLK----RGGNSRFLKTAAYGHFGREDPDFTWEVVK 327
            TKVDRS AY  R  AKSIV + LA++  VQ+SYAIGV +P+S+ V+T+ TG I    +  ++ + FD RP  I    DL+    + G + F KTA+YGHFGR D D  WE V+
Sbjct:  287 TKVDRSAAYAARYVAKSIVKAKLAKKAEVQLSYAIGVAKPISILVETFDTGVISQANLTELINKYFDLRPAAIIKEFDLRNLPQKMGGTFFRKTASYGHFGRRDLDLPWEKVE 399          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_PROMM (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9313) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLK-----RGGNSRFLKTAAYGHFGREDPDFTWEVV 324
            TKVDRS AY  R  AK +VA+GLA+R  VQ+SYAIGV +P+S+ V+++ TGK+ + E+  +V+++FD RPG I     L+     RGG   +  TAAYGHFGR D    WE V
Sbjct:  287 TKVDRSAAYAARFVAKCLVAAGLAQRAEVQLSYAIGVAKPVSILVESFGTGKVTNDELTALVQDHFDLRPGAIIEQFKLRQLPQQRGGRF-YQDTAAYGHFGRPDLKLPWEDV 398          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_PARDP (S-adenosylmethionine synthetase OS=Paracoccus denitrificans (strain Pd 1222) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGR---EDPDFTWE---VVKPLKYE 342
            TKVDRS AY  R  AK++VA+GLA+RC++Q+SYAIGV +PLS++ DT+ T ++P+ EI R V    D  P  I  +L L R     + +TAAYGHFGR    D  F+WE   +V+ +K E
Sbjct:  271 TKVDRSAAYAARYLAKNVVAAGLAKRCVIQLSYAIGVAKPLSIYADTFGTSEVPEAEIERAVSRAMDLTPRGIREHLALCR---PIYRRTAAYGHFGRAPDADGGFSWERTDLVEAIKRE 387          
BLAST of CK934072 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 TKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 318
            +KVDRSGAY+ R  AK++V +GLA +C VQ++Y IGV EP+SV V +  + ++ D+ + R V+E FD RP  I   LDL R     + KT  YGHFGRE P+FTWE
Sbjct:  273 SKVDRSGAYMGRYIAKNVVKAGLAPKCEVQIAYCIGVAEPVSVLVSSLGSSELSDEVLTRAVREVFDLRPYHIIKRLDLNR---PIYGKTTCYGHFGRELPEFTWE 375          
The following BLAST results are available for this feature:
BLAST of CK934072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_SYNR32.190e-2249.56S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHESH2.190e-2250.94S-adenosylmethionine synthetase OS=Shewanella sedi... [more]
METK_SHELP2.190e-2251.89S-adenosylmethionine synthetase OS=Shewanella loih... [more]
METK_SALHS2.190e-2252.83S-adenosylmethionine synthetase OS=Salmonella heid... [more]
METK_PSEFS2.190e-2250.00S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PSEF52.190e-2250.00S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PROMS2.190e-2247.79S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROMM2.190e-2249.56S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PARDP2.190e-2248.33S-adenosylmethionine synthetase OS=Paracoccus deni... [more]
METK_DESVM2.190e-2250.94S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934072 ID=CK934072; Name=CK934072; organism=Citrus sinensis; type=EST; length=544bp
ACCAAGGTTGATAGAAGTGGTGCTTACATTGTGAGGCAGGCAGCAAAGAG
CATCGTTGCCAGTGGCCTTGCTCGCCGCTGCATTGTGCAGGTTTCTTATG
CTATTGGTGTCCCAGAGCCCCTTTCAGTGTTTGTTGACACTTATCGAACT
GGAAAGATTCCGGACAAGGAGATCCTGAGGATTGTGAAGGAGAACTTTGA
TTTCAGGCCTGGAATGATTGCCATTAACTTGGATCTCAAGAGGGGAGGAA
ATAGCAGGTTTTTGAAGACTGCTGCATATGGGCATTTTGGAAGGGAGGAT
CCTGACTTCACATGGGAGGTGGTGAAGCCCCTCAAGTATGAGAAACCCCA
AGAGTAGTATTTAAGTATGCAGTTTCATTCTTTGTTTGAACTTAATAATT
TACTTGTTCTTTCGTCTGCCTGTCAGATTCTGTCTTTTTTCTCTCTTGGT
CTTGGCCTTTTTTTTTATAAATAAATTTGTATTATCTTTGCCATAATAGA
AAGATATATGTGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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