CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_YERPB (Betaine aldehyde dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G   + T  E
Sbjct:   21 GDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_YERPA (Betaine aldehyde dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=betB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.990e-15
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G TF   +P   E IA +   +A+D+D+AVA A++   +  W  MT  ERSRI+ RA D++    +ELAA+ET + GKP  ++   ++     +L YYAG    + G  +P  G   + T  E
Sbjct:   21 GDTFDAVNPANGECIAQLQAANAQDVDKAVAAAKQG--QPVWAAMTAMERSRILRRAVDILRDRNDELAAIETADTGKPLSETRSVDIVTGADVLEYYAGLIPALEGQQIPLRGSAFVYTRRE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: FEAB_ECOLI (Phenylacetaldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=feaB PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTV 730
            K   ++DP T + IA+ A+ +  D+D AV +A +AF    W    P ER RI+LR ADL+E++ EELA LET   GK    S   EV   +  + Y AG   KI G T+
Sbjct:   35 KRLAIFDPATGQEIASTADANEADVDNAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELAQLETLEQGKSIAISRAFEVGCTLNWMRYTAGLTTKIAGKTL 143          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_XANAC (Betaine aldehyde dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=betB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 48/123 (39.02%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            G T  V +P T EV+ANV     +D+D AV +A+    +  W  +T  ERSRI+LRA  L+ +  + LA LET N GKP  ++   +V     +L YYAG A  + G  VP        T HE
Sbjct:   21 GHTLEVVNPATGEVLANVHNAGVDDLDAAVDSAKAG--QQRWAALTTVERSRILLRAVALLRERNDALAQLETLNTGKPLSETRSVDVVTGADVLEYYAGVAQALQGAQVPLREGSFFYTRHE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SHIFL (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEVSAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_SHIF8 (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=ydcW PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.905e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE +D AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEVSAEQVDAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_STRMK (Betaine aldehyde dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.802e-15
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            GKTF   +P T EVIA V      D++RAV +A +   +  W  MT  ERSRI+ RA +++ +  +ELA LET + GK   ++   ++     ++ YYAG A  I G+ +P
Sbjct:   21 GKTFKTVNPATGEVIAEVQVASQADVERAVQSASEG--QKVWAAMTAMERSRILRRAVEILRERNDELAHLETLDTGKALAETTTVDIVTGADVVEYYAGLATAIEGIQLP 129          

HSP 2 Score: 21.9422 bits (45), Expect = 4.802e-15
Identity = 13/22 (59.09%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  255 PVQISYTKNLINGQFVDAASGK 320
            PVQ  Y    I+GQ VDA SGK
Sbjct:    5 PVQQLY----IHGQRVDATSGK 22          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECO7I (Betaine aldehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGXXHIQTLHE 769
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P      + T HE
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLRETSFVYTRHE 141          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOUT (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE ++ AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ABDH_ECOL6 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O6 GN=ydcW PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.661e-15
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGL 724
            G+  PVY+P T +V+  +AE  AE ++ AV  A  AF E  W + TP  R+  +L+ AD+IE+N +  A LE+ N GKP   +   E+P +V +  ++AG A  ++GL
Sbjct:   16 GEKQPVYNPATGDVLLEIAEASAEQVNAAVRAADAAFAE--WGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIPAIVDVFRFFAGAARCLNGL 121          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
BETB_YERPB2.990e-1535.77Betaine aldehyde dehydrogenase OS=Yersinia pseudot... [more]
BETB_YERPA2.990e-1535.77Betaine aldehyde dehydrogenase OS=Yersinia pestis ... [more]
FEAB_ECOLI3.905e-1541.28Phenylacetaldehyde dehydrogenase OS=Escherichia co... [more]
BETB_XANAC3.905e-1539.02Betaine aldehyde dehydrogenase OS=Xanthomonas axon... [more]
ABDH_SHIFL3.905e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_SHIF83.905e-1539.81Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
BETB_STRMK4.802e-1537.84Betaine aldehyde dehydrogenase OS=Stenotrophomonas... [more]
BETB_ECO7I6.661e-1535.16Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
ABDH_ECOUT6.661e-1538.89Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECOL66.661e-1538.89Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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