CK934082

Overview
NameCK934082
Unique NameCK934082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934082_ssr47 microsatellite CK934082_ssr47:47..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: ALDH5_YEAS7 (Aldehyde dehydrogenase 5, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=ALD5 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.484e-14
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            KTF V +P   E I  V +   +D+D AVA A+KAF E  W  + P  R++ +   ADL+EK+ E LAA+E+ +NGK  +   + +V +V + L    GWADKI+G
Sbjct:   59 KTFDVINPSNEEKITTVYKAMEDDVDEAVAAAKKAF-ETKWSIVEPEVRAKALFNLADLVEKHQETLAAIESMDNGKS-LFCARGDVALVSKYLRSCGGWADKIYG 162          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEU5 (Betaine aldehyde dehydrogenase OS=Pseudomonas stutzeri (strain A1501) GN=betB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  404 KTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            +TF   +P   EV+A VAE  A D++RAV +A +   +  W  +T  ER+RIM RA DL+ +  +ELA LET + GKP  ++   ++     +L YYAG A  I G  +P
Sbjct:   22 QTFESINPANGEVLAEVAEAGAADLERAVESAEQG--QRIWAALTGIERARIMRRAVDLLRERNDELALLETLDTGKPLSETRSVDIITGADVLEYYAGLAPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEMY (Betaine aldehyde dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            G+TF   +P T EV+A V      D+DRAVA+A +   +  W  MT  +RSRI+ RA D++ +  +ELA LET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:   21 GQTFDSINPATGEVLAKVQRASQADVDRAVASAAEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAELETLDTGKPLSETRYVDIVTGADVLEYYAGLIPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEAE (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa GN=betB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            G TF   +P   EV+A V     ED++RAV +A +   +  W  MT  +RSRI+ RA D++ +  +ELAALET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:   21 GATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEAB (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=betB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            G TF   +P   EV+A V     ED++RAV +A +   +  W  MT  +RSRI+ RA D++ +  +ELAALET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:   21 GATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_PSEA8 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=betB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            G TF   +P   EV+A V     ED++RAV +A +   +  W  MT  +RSRI+ RA D++ +  +ELAALET + GKP  ++   ++     +L YYAG    I G  +P
Sbjct:   21 GATFETINPANGEVLAKVQRASREDVERAVQSAVEG--QKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLAETRSVDIVTGADVLEYYAGLVPAIEGEQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_MARMS (Betaine aldehyde dehydrogenase OS=Marinomonas sp. (strain MWYL1) GN=betB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.938e-14
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  401 GKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHG 721
            G+ F   +P T EVIA V      ++D AV +A++   +  W  M+P ER RI+ +AA+L+ +N EELA LE  + GKP  +++  ++     ++ YYAG  DKI G
Sbjct:   18 GEHFETINPATGEVIATVEHAGQAELDAAVESAKQG--QKVWSAMSPVERGRILKKAAELLRENNEELARLEVLDTGKPLQEAIVVDIQTGADVIEYYAGLTDKIQG 122          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECOLI (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=betB PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECOLC (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=betB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIP 129          
BLAST of CK934082 vs. ExPASy Swiss-Prot
Match: BETB_ECODH (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=betB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.306e-14
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  386 TCLALGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVP 733
            T    G+TF   +P    V+A V     ED+DRAV +A++   +  W  MT  ERSRI+ RA D++ +  +ELA LET + GK Y ++   ++     +L YYAG    + G  +P
Sbjct:   16 TSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQG--QKIWASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIP 129          
The following BLAST results are available for this feature:
BLAST of CK934082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
ALDH5_YEAS71.484e-1441.51Aldehyde dehydrogenase 5, mitochondrial OS=Sacchar... [more]
BETB_PSEU51.938e-1440.00Betaine aldehyde dehydrogenase OS=Pseudomonas stut... [more]
BETB_PSEMY1.938e-1438.74Betaine aldehyde dehydrogenase OS=Pseudomonas mend... [more]
BETB_PSEAE1.938e-1437.84Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEAB1.938e-1437.84Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEA81.938e-1437.84Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_MARMS1.938e-1438.32Betaine aldehyde dehydrogenase OS=Marinomonas sp. ... [more]
BETB_ECOLI3.306e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOLC3.306e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECODH3.306e-1436.21Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_F12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934082 ID=CK934082; Name=CK934082; organism=Citrus sinensis; type=EST; length=769bp
GGGGATGCATGCAGTTGCAAGCTTAACTCGCTAGGACAAAAGTTGCAGAG
AGAGAGAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGC
TATGGCAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTT
CTGCTTCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCA
AGAGGCATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCAT
TCCACCTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTG
TAGACGCAGCATCAGGTAAGATGATTGTTTCCTGATATTTTGGAGCTCAT
TGTTTCTGTTGCTGATAATGAGCCCAATGTTGGAAACTTGTCTGGCCTTA
GGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTAA
TGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCTC
GCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAGG
TCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGGA
GCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCTC
TCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGGA
TGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAANNNACCA
TATTCAAACTTTACATGAA
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