CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 61/104 (58.65%), Postives = 86/104 (82.69%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V  VTD+S++  VI++  PVLV+FWAPWCGPCRM++P ++E+A+EY   +   K+NTDD+P IA +YGIRSIPT++ FK GE+ +++IGAVPKSTL+STL+KY+
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGERVDTVIGAVPKSTLASTLNKYI 106          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 59/101 (58.42%), Postives = 87/101 (86.14%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V+D+S++  V+ SE PVLV+FWAPWCGPCRM+AP ++E++++Y GKV   KLNTD++PN A++YGIRSIPT++ FK G++ + ++GAVPK+TL+STL+KY+
Sbjct:    7 VSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_PORPU (Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.608e-33
Identity = 60/104 (57.69%), Postives = 86/104 (82.69%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V  VTD+S++  VI+++ PVLV+FWAPWCGPCRM++P ++ +A+EY   +   K+NTDD+P IA +YGIRSIPT++ FK+GE+ +++IGAVPKSTL STL+KY+
Sbjct:    3 VSQVTDASFKQEVINNDLPVLVDFWAPWCGPCRMVSPVVDAIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKSGERVDTVIGAVPKSTLESTLNKYI 106          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 57/101 (56.44%), Postives = 86/101 (85.15%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDS+++  V+ S+ PVLV+FWAPWCGPCRM+AP ++E+A++Y GK+   K+NTD++P +A++YGIRSIPT++ FK G+K + ++GAVPK+TLS TL+K++
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 57/101 (56.44%), Postives = 86/101 (85.15%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDS+++  V+ S+ PVLV+FWAPWCGPCRM+AP ++E+A++Y GK+   K+NTD++P +A++YGIRSIPT++ FK G+K + ++GAVPK+TLS TL+K++
Sbjct:    7 VTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 60/101 (59.41%), Postives = 85/101 (84.16%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD S+E  V++SE  VLV+FWAPWCGPCRMI+P I+ELA+EY  +V   K+NTD++P+I+ +YGIRSIPT++ FK+G++ +++IGAVPKSTL++ L KY+
Sbjct:    7 VTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKYL 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 54/101 (53.47%), Postives = 89/101 (88.12%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD++++  V+ S  PVLV+FWAPWCGPCRM+AP ++E+A++Y+ +V   K+NTD++P++A++YGIRSIPT++ FK+G++ ++++GAVPK+TL++TLDK++
Sbjct:    7 VTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 59/105 (56.19%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 585
            +  V D+S+   VI+S  PVLV+FWAPWCGPCRMIA  I+E+A +Y  K+   K+NTD +P IAT+YGIRSIPTV+ F NG+K ++++GAVPK TL +TL K+++
Sbjct:    3 ISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKKVDTVVGAVPKLTLLNTLQKHLK 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.134e-28
Identity = 57/101 (56.44%), Postives = 81/101 (80.20%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            + + ++EN V+ SE  VLV+FWAPWCGPCRMI P +EE+AKE+  KV   ++NTD++PN+AT YGIRSIPT++ FK G++ +++IGAVPKS L  T++KY+
Sbjct:    4 IDELTFENEVLQSEKLVLVDFWAPWCGPCRMIGPILEEIAKEFNLKVV--QVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGAVPKSILIHTINKYL 102          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RICFE (Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 53/101 (52.48%), Postives = 78/101 (77.23%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTDSS++  V+ S+ PVLV+FWA WCGPC+M+ P I+E++KE  GKV   K+N D++PNI ++YGIRSIPT++ FKNGE+K++ IG   K++L   ++K +
Sbjct:    5 VTDSSFKKEVLESDLPVLVDFWAEWCGPCKMLTPIIDEISKELKGKVKVLKMNIDENPNIPSEYGIRSIPTIMLFKNGEQKDTKIGLQQKNSLLDWINKSI 105          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_PORYE1.529e-3358.65Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
THIO_SYNY31.997e-3358.42Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_PORPU2.608e-3357.69Thioredoxin OS=Porphyra purpurea GN=trxA PE=3 SV=1[more]
THIO1_ANASP5.811e-3356.44Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO5.811e-3356.44Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_CYACA8.391e-3259.41Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO1_SYNE78.391e-3253.47Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_GRIPA2.699e-3056.19Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]
THIO_CYAME1.134e-2856.44Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_RICFE2.139e-2752.48Thioredoxin OS=Rickettsia felis GN=trxA PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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