CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  328 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V+++F A WCGPCR IAP   E AK++ G V   K++ D+   +A KY + ++PT LF K+G + + ++GA  K  L +T+ K+V
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHV 113          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  328 VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V+++F A WCGPCR IAP   E AK++ G V   K++ D+   +A KY + ++PT LF K+G + + ++GA  K  L +T+ K+V
Sbjct:   31 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVKHV 113          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 38/103 (36.89%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 579
            V++VT  +  + +IS    V+V+F+A WCGPC+ IAP  EE +K Y  K+   K++ D+   +  K  I S+PT   +KNG   ++++GA   S L   ++KY
Sbjct:    2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  289 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 546
            + ++  V  +  PV+V+F A WCGPC+ IAPA+E+L++ + G +  +K++ D+   +A   G+ ++PT  F+K GE+ E + GA P
Sbjct:   10 AEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTG-IQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANP 94          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 35/103 (33.98%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEY-AGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            VQV+++    N + +S   ++++FWA WCGPCR+I+P  E+ +++Y A  +   K++ D + +I+ +  IR++PT   +K+G+K + ++GA P + L S + K
Sbjct:    2 VQVISNLDEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANP-TALESLVQK 103          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 36/103 (34.95%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKY 579
            V++++  ++++ + S    VLV+F+A WCGPCRM+ P +E LA E    V   K+N D++   A  Y + SIPT++ FK+G +   ++G   K  L++ ++K+
Sbjct:    2 VKIISSENFDSFIASGL--VLVDFFAEWCGPCRMLTPILENLAAELP-HVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 35/92 (38.04%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 546
            V+ V+DSS    ++  +  V+V+F+A WCGPC+ IAP  E+ +  Y+      K++ D    IA + G+ ++P+   +KNGEK E I+GA P
Sbjct:    2 VKQVSDSSEFKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYS-DATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANP 92          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.916e-13
Identity = 35/91 (38.46%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  274 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 546
            Q  T S +++  I+ +  V+V+F+A WCGPC+MIAP IE+ +++Y  +   +KL+ D+  ++A K  + ++PT+L FKNG++   ++GA P
Sbjct:    4 QFKTASEFDS-AIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANP 92          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.114e-13
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  325 PVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGA 540
            P++V+F A WCGPC+MIAP  E L+ +YAGKV   K++ D    +A   GI ++PT   +K+G K + ++GA
Sbjct:   27 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGA 98          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 1
Query:  262 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 585
            + +V  V      N  IS++   +V+F+A WCGPC+ + P +E+L+ E   K +   +N D   +IA K G+ ++PT++ F+ G++ + I+GA  K TLSS L KY E
Sbjct:   16 LRKVNAVESFGDYNTRISADKVTVVDFYADWCGPCKYLKPFLEKLS-EQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVK-TLSSLLAKYQE 121          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
TRXH_ORYSJ2.296e-1341.18Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI2.296e-1341.18Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
THIO_PLAF72.296e-1336.89Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIO_PENCH2.296e-1337.21Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_COPCM2.296e-1333.98Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_CHLPN2.296e-1334.95Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TRX1_SCHPO2.998e-1338.04Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
TRX1_YEAST3.916e-1338.46Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRXH_CHLRE5.114e-1344.44Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRX2_SCHPO6.679e-1337.04Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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