CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 558
            V+D+S+E  V+ ++ P  V+FWA WCGPCR  APA+EELA     KV   K+N D++P   +KYG+R IPT++ FK+G+   + IGA+PK+ L
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATKIGALPKTKL 96          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            +T+ ++E+ +   +   LV+FWAPWCGPC+M++P I+ELA EY GK    K+NTD+   ++ K+GIRSIPT+LF K+GE    ++G   K  L   L+K
Sbjct:    7 LTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNK 103          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            +T+ ++E+ +   +   LV+FWAPWCGPC+M++P I+ELA EY GK    K+NTD+   ++ K+GIRSIPT+LF K+GE    ++G   K  L   L+K
Sbjct:    7 LTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNK 103          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 45/97 (46.39%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTL 570
            +TD++++   I  + PVLV+FWA WCGPCRM+AP +EE A+ +A KV   KLN D++P   +++GI SIPT++ FK G   + +IG  PK  L + L
Sbjct:    5 LTDANFQQ-AIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  265 NEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 585
            N +  +TD  ++  ++ S+  VLV+FWA WC PC+++AP +E++AKEY  K+   K+N D +PN A KY IR IP +L FKN E   + +GA+ K  L   L+ Y++
Sbjct:    3 NCIVELTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSELVGTKVGALSKVQLKDFLNLYLK 109          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGE 516
            VTD S+E+ V+ S  PVLV++WA WCGPC+MIAP ++E+A EYAG++   KLN D++PN   +YGIR IPT++  +  E
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSE 86          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 41/90 (45.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  307 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAVPK+   S L++
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNE 137          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 41/90 (45.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  307 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAVPK+   S L++
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNE 137          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 41/90 (45.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  307 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAVPK+   S L++
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNE 137          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 41/90 (45.56%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  307 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            ++  + PV+++FWAPWCGPCR  AP  E++A+E +GKV   K+NT+    +++++GIRSIPT++ FKNG+  + + GAVPK+   S L++
Sbjct:   48 LLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNE 137          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_RHORU1.343e-2148.39Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_HELPY2.290e-2145.45Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.290e-2145.45Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_ALIAC3.907e-2146.39Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]
THIO_BUCBP6.664e-2142.06Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_THIRO8.703e-2153.16Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO2_SHIFL8.703e-2145.56Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI8.703e-2145.56Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL68.703e-2145.56Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO578.703e-2145.56Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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