CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  A  + + SIPT++ FK+G+  + I+GA  K+ L   L   V
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E A  +   KL+ D +P  A  + + SIPT++ FK+G+  + I+GA  K+ L   L   V
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            VTD+S+   V+SS  PVLV+FWA WCGPC+M+AP +EE+A E   ++   KL+ D +P +A ++ + SIPT++ F+ G+  + I+GA  K+ L   L   V
Sbjct:  354 VTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAKGKAALLRDLSDVV 454          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V+ +TD+++E    +SE  VL +FWA WCGPCRM+AP +EE+ +E    +   K++ D++P     +G+ SIPT+L  K+GE  E+IIG  PK  L   ++KYV
Sbjct:    2 VKEITDATFEQE--TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V+ +TD+++E    +SE  VL +FWA WCGPCRM+AP +EE+ +E    +   K++ D++P     +G+ SIPT+L  K+GE  E+IIG  PK  L   ++KYV
Sbjct:    2 VKEITDATFEQE--TSEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  313 SSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            +SE  VL +FWAPWCGPC+MIAP +EEL +E   K+   K++ D++   A KYG+ SIPT+L  K+GE  E+ +G  PK  L   ++K++
Sbjct:   15 TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.657e-19
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  262 VNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 585
            +N++  +TD ++E  V+  ++ VLV+FWA WC PC+++AP +EE+A+EY  K+   KLN + +PN A  Y IR IP +L F   E   + +GA+ K  L   LD+ ++
Sbjct:    1 MNKIIELTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGREVLATKVGAISKLQLKDFLDENIK 108          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.006e-17
Identity = 33/83 (39.76%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  298 ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 546
            ++L+ +SE PV ++FWA WCGPC+M+AP++++LA E+ G++   K+N D  P+ A ++ ++ IP ++ F  G+ K    GA+P
Sbjct:    6 DDLIRTSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLKWRTAGAIP 88          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 42/95 (44.21%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIAT--KYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 558
            VTD S+   V+ S  PVLV+FWA WCGPC+M+AP +EE+A E   ++   K++ D   N AT   + + SIPT++ FK+G   + I+GA  K+ L
Sbjct:   10 VTDDSFSTDVLGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAKGKAAL 104          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  322 NP-VLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDK 576
            NP V+V+FWAPWCG C+M+ P +EE+  E    V   KLN DD  ++A ++ + SIPT++ FK+G++ +  IG V KS + + + K
Sbjct:   18 NPLVIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFKDGKEVDRSIGFVDKSKILTLIQK 103          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIO_MYCTU3.307e-2045.54Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO3.307e-2045.54Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
TRXB_MYCLE1.257e-1943.56Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_LISMO1.257e-1943.27Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN1.257e-1943.27Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_BACSU1.257e-1946.67Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_BUCAP3.657e-1939.81Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO1_CHLTE2.006e-1739.76Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_MYCSM4.470e-1744.21Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO_TREPA3.784e-1643.02Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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