CK934095

Overview
NameCK934095
Unique NameCK934095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1449 contig Csv1_Contig1449:83..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 36/110 (32.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  253 REAVNEVQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            R  +    V     +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+  +  +G   +  L + L K +
Sbjct:   56 RVCLTTFNVQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  280 VTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYVE 585
            +TD+ +E        PVLV FWA WCGPCR++APAI+ +AK+Y  K+   KL  D +P    +  +  +P +  FKN E   +  GA+ K  L   L + ++
Sbjct:    6 ITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELVMTHEGAIAKPKLLELLKEELD 107          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 34/96 (35.42%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  295 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+  +  +G   +  L + L K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 34/96 (35.42%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  295 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+  +  +G   +  L + L K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 31/80 (38.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  298 ENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIG 537
            + L+++ +  V+++F+A WCGPC++IAP ++ELA EY+ +V   K+N D++ +I  +Y + S+PT +F K G   E  +G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 34/96 (35.42%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  295 WENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            +++ V++SE PV+V+F A WCGPC+++ P +E++  +  GKV   K++ DD  ++A +Y + ++PTVL  KNG+  +  +G   +  L + L K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.453e-15
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  271 VQVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            V  +TD+ +E+ V+ +E PVLV FWA WCGPC++++P I   A  Y+ ++   KL  D +P    KY +  +P +   K  +  +S  G + K  L S LD ++
Sbjct:    5 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 108          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: TRX2_YEAST (Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 35/91 (38.46%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  274 QVVTDSSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVP 546
            Q+ + S +++ + S +  V+V+F+A WCGPC+MIAP IE+ A++Y+   A +KL+ D+  ++A K  + S+PT++F+K G++   ++GA P
Sbjct:    4 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYS-DAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGGKEVTRVVGANP 93          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 35/98 (35.71%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  289 SSWENLVISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSSTLDKYV 582
            +++  ++  S  PVLV+F+A WCGPC+M+AP +E++      ++   K++TD  P IAT+Y I+S+PT++ FK G+    + G    + L   L  +V
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV 105          
BLAST of CK934095 vs. ExPASy Swiss-Prot
Match: THIO_MYCGE (Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.076e-14
Identity = 33/84 (39.29%), Postives = 56/84 (66.67%), Query Frame = 1
Query:  307 VISSENPVLVEFWAPWCGPCRMIAPAIEELAKEYAGKVACFKLNTDDSPNIATKYGIRSIPTVLFFKNGEKKESIIGAVPKSTL 558
            + S++  V+V+FWA WCGPC++ +P  ++ A E++      K+N DD  +IA  Y I S+PT++ F+NG +K+  IG +PK+ +
Sbjct:   14 IFSAKKNVIVDFWAAWCGPCKLTSPEFQKAADEFSD-AQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAIGFMPKTKI 96          
The following BLAST results are available for this feature:
BLAST of CK934095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
THIOM_MOUSE1.438e-1532.73Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIO2_SYNY31.438e-1537.25Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIOM_RAT1.878e-1535.42Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_HUMAN1.878e-1535.42Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIOT_DROME2.453e-1538.75Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIOM_BOVIN2.453e-1535.42Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO2_ANASP2.453e-1535.58Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
TRX2_YEAST7.136e-1538.46Thioredoxin-2 OS=Saccharomyces cerevisiae GN=TRX2 ... [more]
THIO1_SYNY31.590e-1435.71Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO_MYCGE2.076e-1439.29Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934095 ID=CK934095; Name=CK934095; organism=Citrus sinensis; type=EST; length=688bp
GCGGGGACCCAGCAAAAGAAAAAAGAAAGACANNNAAAAATGGCTATGAA
GAATTGTTTTCAAGTTAGCTCAGTGTATAGCACTAGAGCTGGTGTGGTAC
AATGTTACCAACCATTTTCATCTGTAAAGAAGATTCATTTGCCGATTAGT
AACGGGTTGAATAAATCCAATTTCTCATTCACTTCATCATGCTCATCTCT
TTCTCTTCCACTCGGAAGCAGAAGCAGAAACTCCTTGATTCTCTGCAAAG
CTCGGGAAGCTGTCAATGAAGTTCAAGTGGTGACAGATTCAAGTTGGGAA
AACCTTGTGATATCAAGTGAAAACCCTGTGCTTGTGGAGTTTTGGGCACC
TTGGTGCGGACCATGCCGGATGATAGCGCCAGCTATTGAGGAATTAGCCA
AAGAATACGCCGGAAAAGTTGCCTGTTTCAAGCTCAACACCGATGATTCC
CCCAACATTGCAACTAAGTATGGAATTAGAAGCATTCCAACTGTGCTCTT
CTTCAAGAATGGAGAGAAGAAGGAGAGCATCATTGGTGCTGTTCCCAAAT
CTACTTTGTCCTCTACTTTAGATAAATATGTAGAATGAATGGCCAAAAAT
CACATTTACATGTTGTATGAATGACATATTAATCCAAGTTTATGTTTCAT
TTCAAATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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