CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_FELCA (Malate dehydrogenase, cytoplasmic OS=Felis catus GN=MDH1 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DV+HA V     E  V + +KDD+WL GEFITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMG+ SDG+ Y VP  L+YSFPVT +N  W +V+GL+I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVSHAKVKLHGKEVGVYDALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNPYGVPDDLLYSFPVTIKNKTWKVVEGLTINDFSREKMDLTAKELAEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.491e-36
Identity = 79/131 (60.31%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAIADHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 79/131 (60.31%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA V     E  V E +KDD+WL GEFITTVQQRGAA+IKARK            DHIRD   GTPEG +VSMGV SDG SY VP  L+YSFPV  +N  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAISDHIRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVIKNKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 76/131 (58.02%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D +HATVN    +    E VK+D WL GEFITTVQQRGAA+IKARK           CDH+RD   GTP+G +VSMGV SDG SY +P  L+YSFP+T +N  W IV+GL I++FSR+K+DLTA+EL EEK
Sbjct:  194 DASHATVNLQGKDVGAFEAVKNDDWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPDGQFVSMGVISDGNSYGIPEDLMYSFPLTIKNKTWKIVEGLPINDFSREKMDLTAKELHEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.954e-36
Identity = 76/131 (58.02%), Postives = 92/131 (70.23%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNHA VN    E  V E +KDD+WL G+FI TVQQRGAA+IKARK           CDH+RD   GTP G +VSMGV SDG SY VP  L+YSFPV  ++  W  V+GL I++FSR+K+DLTA+EL+EEK
Sbjct:  194 DVNHAKVNVKGKEVGVYEAIKDDSWLKGDFILTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPAGEFVSMGVISDGNSYGVPEDLLYSFPVVIKDKTWKFVEGLPINDFSREKMDLTAKELTEEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_DICDI (Probable malate dehydrogenase 3 OS=Dictyostelium discoideum GN=mdhC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 70/124 (56.45%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   22 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            +N + G+ P+   +KD+ WL GEFI+TVQ+RGAA+I ARK            DH+ DWVLGT EG +VSMGVYSDGSY VP GLI+SFPV C NG++TIVQGL +D+ S+  ++LT EEL  EK
Sbjct:  201 INLSTGKTPISTAIKDEKWLQGEFISTVQKRGAAVIAARKLSSAASAAKAITDHMHDWVLGTAEGEYVSMGVYSDGSYGVPEGLIFSFPVKCANGKYTIVQGLQMDDLSKNLINLTTEELVAEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHC_XENLA (Malate dehydrogenase, cytoplasmic OS=Xenopus laevis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 73/131 (55.73%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D +HA+V     +    E VK+D WL G FITTVQQRGAA+IKARK           CDH+RD   GTPEG +VSMGV SDG SY VP  L+YSFP+T +N  W IV+GL I++FSR+K+D+TA+EL +EK
Sbjct:  194 DASHASVTLQGKDVGAFEAVKNDDWLKGGFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGQFVSMGVISDGNSYGVPEDLMYSFPLTIKNKTWKIVEGLCINDFSREKMDITAKELQDEK 324          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHA_DICDI (Probable malate dehydrogenase 1 OS=Dictyostelium discoideum GN=mdhA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 70/133 (52.63%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    4 DVNHATVNTAAGE---KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DVNH  +         +P+   V DD WLN +FI  VQ RGA +I ARK             H+RDW+LGT +G  VSM VYSDGSYNVP GLI+SFPVTC NG+WTIVQGL I+  +++K+D T +EL EEK
Sbjct:  251 DVNHGYILNYPNRGLIEPIPSSVNDDKWLNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHVSMAVYSDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEK 383          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 71/130 (54.62%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D++H T+      +P  + V + AW+   FI TVQQRGAAIIKAR             DH+RDW LGTPEG W SM V SDGSY + AGLIYSFPVTCR G++ IV GLS+D+FSR ++D TA EL+EE+
Sbjct:  194 DISHCTIQG----RPAADQV-EHAWVKDTFIPTVQQRGAAIIKARGASSAASAASAAIDHMRDWALGTPEGEWTSMAVPSDGSYGIEAGLIYSFPVTCRGGDYKIVSGLSVDDFSRARMDQTAAELAEER 318          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CELJU (Malate dehydrogenase OS=Cellvibrio japonicus (strain Ueda107) GN=mdh PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.718e-33
Identity = 70/123 (56.91%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   25 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            NT    KP   LV D AW   ++I TVQQRGAAII AR             +HIRDW LGTP   WVSMGVYSDGSY +  GLIYSFP  C+NG+W IVQGL I+EFSR K+  T +EL EE+
Sbjct:  197 NTLVDGKPALSLV-DQAWYESDYIPTVQQRGAAIIAARGASSAASAANAAINHIRDWALGTPANDWVSMGVYSDGSYGIEKGLIYSFPCVCKNGDWEIVQGLDINEFSRAKMTATEKELQEER 318          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDHC_FELCA9.186e-3758.02Malate dehydrogenase, cytoplasmic OS=Felis catus G... [more]
MDHC_MOUSE3.491e-3660.31Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_RAT4.559e-3660.31Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_XENTR5.954e-3658.02Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_CHICK5.954e-3658.02Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDHC_DICDI7.776e-3656.45Probable malate dehydrogenase 3 OS=Dictyostelium d... [more]
MDHC_XENLA5.573e-3455.73Malate dehydrogenase, cytoplasmic OS=Xenopus laevi... [more]
MDHA_DICDI1.621e-3352.63Probable malate dehydrogenase 1 OS=Dictyostelium d... [more]
MDH_HALHL2.766e-3354.62Malate dehydrogenase OS=Halorhodospira halophila (... [more]
MDH_CELJU4.718e-3356.91Malate dehydrogenase OS=Cellvibrio japonicus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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