CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDHB_DICDI (Probable malate dehydrogenase 2, mitochondrial OS=Dictyostelium discoideum GN=mdhB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.893e-22
Identity = 56/130 (43.08%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRN-GEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D+N  TV      K + + + D  W+   FI TVQQRGAAII AR             DH+RDW  GT  G W SM +YS+G Y    GL +SFPV   N G++ IV+GL +D+FS+++ D T +EL  E
Sbjct:  215 DINFGTVKG----KSLVDTINDQKWVKDNFIPTVQQRGAAIIAARGLSSAASAASAAIDHMRDWTYGT-NGQWTSMAIYSEGEYGADKGLYFSFPVIVDNKGKYEIVKGLKLDQFSQERFDATRKELLSE 339          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_MYCVP (Malate dehydrogenase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.347e-22
Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+ HA V   +G     +   D  WL  +FI TV +RG AII+AR             DHI DWV GTP+G W S+ + S G+Y V  GL+ SFP     G W IV+GL I+ FSR ++D +  EL  E+
Sbjct:  198 DIFHAVVGGRSGA----DYAADTRWLTDDFIPTVARRGTAIIEARGASSAASAANGAIDHIDDWVHGTPDGDWTSVALPSPGAYGVDEGLVCSFPCRSVGGRWEIVEGLDINPFSRARIDASVAELRTER 323          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.424e-21
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D  HA +    G + V++L+ D+ W    FI  V QRG AII+AR             D +RDW+ G+ +G WVSM V SDGSY +  GL++  PV C  G +  V+ + ID F+R+++DL+  EL EE
Sbjct:  195 DYRHARI----GRRLVKDLINDENWYRESFIPKVAQRGTAIIEARGASSAASAANAAIDQMRDWIFGS-DGRWVSMSVPSDGSYGIAPGLMFGVPVICDGGRYERVKDIGIDAFARQRIDLSVRELQEE 318          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_COREF (Malate dehydrogenase OS=Corynebacterium efficiens GN=mdh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 55/130 (42.31%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+ +ATV    GEK V +LV  D W   EFI  V +RGA II+ R             DH+RDW+ GT   TW S  + S G+Y +P G+I   P   RNGEW +V+GL I++F R ++D   EEL  E+
Sbjct:  194 DITYATVG---GEK-VSDLVDHD-WYVNEFIPRVAKRGAEIIEVRGKSSAASAASSAVDHMRDWIQGTE--TWASAAIPSTGAYGIPEGIILGLPTVSRNGEWEVVEGLEINDFQRARIDANVEELQGER 316          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 55/126 (43.65%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   22 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTC-RNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            VN    +KPV  ++ D  WL  +FI +VQ+RGAAII+AR             D +RD +L TP G W S  + SDG+ Y +  GLI+SFP    +NGE +IV GL  D F  +K+ LT +EL EE+
Sbjct:  196 VNAKISQKPVETIIPDRQWLEKDFIESVQKRGAAIIQARGKSSAASAASALLDAMRDRILPTPTGQWFSTALLSDGNPYGIEEGLIFSFPCRVKKNGELSIVSGLKWDAFLEEKIKLTEQELKEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CORGL (Malate dehydrogenase OS=Corynebacterium glutamicum GN=mdh PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+ +ATV    GEK V +LV  D W   EFI  V  RGA II+ R             DH+RDWV GT    W S  + S G+Y +P G+    P   RNGEW IV+GL I +F R ++D  A+EL  E+
Sbjct:  199 DITYATVG---GEK-VTDLVDHD-WYVEEFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+ +ATV    GEK V +LV  D W   EFI  V  RGA II+ R             DH+RDWV GT    W S  + S G+Y +P G+    P   RNGEW IV+GL I +F R ++D  A+EL  E+
Sbjct:  199 DITYATVG---GEK-VTDLVDHD-WYVEEFIPRVANRGAEIIEVRGKSSAASAASSAIDHMRDWVQGTE--AWSSAAIPSTGAYGIPEGIFVGLPTVSRNGEWEIVEGLEISDFQRARIDANAQELQAER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_DESPS (Malate dehydrogenase OS=Desulfotalea psychrophila GN=mdh PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.877e-19
Identity = 53/131 (40.46%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+++A +   AGEK  + +  ++ W     I  +QQRGAA+IKAR             DH+R+WVLG+  G WVSMGVYS G SY +   +++S PV C +G+W  V GL +  F R  L+ T  EL  E+
Sbjct:  194 DISYAEI---AGEKVAKGV--ENNWHGDNLIPIIQQRGAAVIKARGASSAASAASAAIDHMRNWVLGSG-GKWVSMGVYSRGNSYGLDEDIMFSLPVICEDGDWREVAGLELSSFQRAMLEATEAELQAER 318          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_LEPIN (Malate dehydrogenase OS=Leptospira interrogans GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   25 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            NT    KPV +++ D  WL G+FI  VQQRGA IIKAR             D +R  +  T  G   S  V SDGSY    GLI+ FP+     +  I+QG+S+++F+++K  +T EEL  E+
Sbjct:  197 NTKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLIFGFPLKSDGKKVEIIQGISLNDFAKEKFKITHEELVSER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_LEPIC (Malate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mdh PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.614e-19
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   25 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            NT    KPV +++ D  WL G+FI  VQQRGA IIKAR             D +R  +  T  G   S  V SDGSY    GLI+ FP+     +  I+QG+S+++F+++K  +T EEL  E+
Sbjct:  197 NTKISGKPVTDVISDHEWLKGDFIKNVQQRGAEIIKARGASSAASAANGVVDTVRGIITPTAPGDCFSAAVVSDGSYGAEKGLIFGFPLKSDGKKVEIIQGISLNDFAKEKFKITHEELVSER 319          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDHB_DICDI4.893e-2243.08Probable malate dehydrogenase 2, mitochondrial OS=... [more]
MDH_MYCVP8.347e-2241.54Malate dehydrogenase OS=Mycobacterium vanbaalenii ... [more]
MDH2_BURTA1.424e-2140.31Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_COREF7.066e-2142.31Malate dehydrogenase OS=Corynebacterium efficiens ... [more]
MDH_PARUW9.228e-2143.65Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH_CORGL1.333e-1942.31Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_CORGB1.333e-1942.31Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH_DESPS3.877e-1940.46Malate dehydrogenase OS=Desulfotalea psychrophila ... [more]
MDH_LEPIN6.614e-1939.84Malate dehydrogenase OS=Leptospira interrogans GN=... [more]
MDH_LEPIC6.614e-1939.84Malate dehydrogenase OS=Leptospira interrogans ser... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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