CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:739..1426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CHLMU (Malate dehydrogenase OS=Chlamydia muridarum GN=mdh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   43 KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            +P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD + Y +P  +I+ FP  CR    GE+ IV GL  D F R K+ ++ +E+ +EKA
Sbjct:  204 RPIVETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDNNPYGLPEDIIFGFP--CRMLGTGEYEIVPGLPWDAFIRGKMQISLDEILQEKA 322          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CHLCV (Malate dehydrogenase OS=Chlamydophila caviae GN=mdh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   43 KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            KP  E++ D  WL      ++Q RG+A+I+AR             +  R   L   +G W S GV SD   Y +P  LI+ FP  CR   +G++ IV GL  D F + K+ ++ +E+S+EKA
Sbjct:  207 KPAVEVISDRDWLENIMFPSIQNRGSAVIEARGKSSAGSAARALAEAARSIFL-PKDGEWFSSGVCSDYNPYGIPDDLIFGFP--CRMLPSGDYEIVPGLPWDAFIKNKIQISLDEISQEKA 325          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CHLAB (Malate dehydrogenase OS=Chlamydophila abortus GN=mdh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/122 (35.25%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   43 KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            KP  E++ D  WL    + ++Q RG+A+I+AR             +  R   L   +G W S GV SD   Y +P  LI+ FP  CR   +G++ IV GL  D F + K+ ++ +E+S+EKA
Sbjct:  207 KPAVEVIGDRDWLENIMLPSIQNRGSAVIEARGKSSAASAARALAEAARSIFL-PKDGEWFSTGVCSDYNPYGIPEDLIFGFP--CRMLPSGDYEIVPGLLWDTFIKNKIQISLDEISQEKA 325          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CHLTR (Malate dehydrogenase OS=Chlamydia trachomatis GN=mdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            D   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI+ FP  CR    GE+ ++  L  D F R K+ ++ +E+ +EKA
Sbjct:  195 DFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLIFGFP--CRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEKA 322          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_CHLTA (Malate dehydrogenase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=mdh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSD-GSYNVPAGLIYSFPVTCR---NGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            D   A +N    ++P+ E + D  WL    + +VQ RG+A+I+AR             +  R  +    EG W S GV SD   Y +P  LI+ FP  CR    GE+ ++  L  D F R K+ ++ +E+ +EKA
Sbjct:  195 DFTQALIN----DRPIAETIADRDWLENIMVPSVQSRGSAVIEARGKSSAASAARALAEAARS-IYQPKEGEWFSSGVCSDHNPYGLPEDLIFGFP--CRMLATGEYEVIPRLPWDAFIRGKMQISLDEILQEKA 322          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDH_CHLMU7.830e-1235.25Malate dehydrogenase OS=Chlamydia muridarum GN=mdh... [more]
MDH_CHLCV7.830e-1235.25Malate dehydrogenase OS=Chlamydophila caviae GN=md... [more]
MDH_CHLAB7.830e-1235.25Malate dehydrogenase OS=Chlamydophila abortus GN=m... [more]
MDH_CHLTR2.278e-1132.59Malate dehydrogenase OS=Chlamydia trachomatis GN=m... [more]
MDH_CHLTA2.278e-1132.59Malate dehydrogenase OS=Chlamydia trachomatis (str... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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