CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 65/130 (50.00%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D++ ATVN     KP  E V D  W   ++I TV +RGAAII+AR             DH+ DW LGT +G WVSMG+ SDGSY +P GLIY FPV  ++G++ IVQGL + +FSR K+D TA+EL EE+
Sbjct:  196 DLSQATVNG----KPALEQV-DRTWYENDYIPTVAKRGAAIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_NITEU (Malate dehydrogenase OS=Nitrosomonas europaea GN=mdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 58/129 (44.96%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D++HA ++     + V +L+KD  W+   FI TVQ RGA +I+AR             DH+RDW+ GT +  W++MG+ SDGSY +P G+IY FPV C+NG   IVQGL I  FSR +LD+  +EL++E
Sbjct:  194 DLSHAEID----HQKVIDLIKDQTWVENSFIPTVQNRGAVVIEARGLSSAASAANAIIDHMRDWIFGTRDDDWITMGILSDGSYKIPKGVIYGFPVVCKNGGRKIVQGLEISPFSRTRLDIAYDELTQE 318          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_LARHH (Malate dehydrogenase OS=Laribacter hongkongensis (strain HLHK9) GN=mdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D   ATVN   GE  V+ ++ D+AW    F+ TV +RGAAII+AR             DHIRDWVLGT  G WV+MG+ SDGSY +P G+ Y FPVTC++G++ IVQGL IDEFSR  ++ T  EL EE+
Sbjct:  197 DYRFATVN---GES-VKSMINDEAWNRDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGT-NGKWVTMGIPSDGSYGIPEGVTYGFPVTCKDGKYEIVQGLEIDEFSRACMNKTLAELEEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_SACEN (Malate dehydrogenase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=mdh PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 68/130 (52.31%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+ HA VN     + V     D AWL   FI TV +RGAAII+AR             DHI  WV GTPEG W S  V SDGSY VP GLI SFPV  R+G + IVQGL IDEFSR+++D +  ELSEE+
Sbjct:  195 DLFHAEVNGKVAAEQV-----DQAWLADTFIPTVAKRGAAIIEARGASSAASAANAAIDHIHTWVNGTPEGDWTSAAVVSDGSYGVPEGLISSFPVVARDGRYEIVQGLEIDEFSRQRIDASVNELSEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 69/127 (54.33%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   28 TAAGEKPVRELVK-----DDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA G K V EL+K      DAW    FI TV +RGAAII+AR             DHIRDW LGT  G WV+MG+ SDGSY++P G++Y FPVTC+NGE+ IV+GL ID FSR+K++ T +EL+EEK
Sbjct:  204 TADGAK-VPELLKLGTAEGDAWNKDTFIPTVGKRGAAIIEARGLSSAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  194 DLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  194 DLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 64/129 (49.61%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D+ HA V+     +P  ELV D  W    FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  194 DLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 63/130 (48.46%), Postives = 86/130 (66.15%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D   ATV+     +P+ +L+ D+AW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPVT  NGE+T+V+ L +D FSR+++D T +EL EE+
Sbjct:  197 DYRFATVDG----QPLAKLINDEAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVTTANGEYTMVKDLEVDAFSRERMDFTLKELLEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 62/115 (53.91%), Postives = 79/115 (68.70%), Query Frame = 1
Query:   49 VRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            V++L+ D AW    F+ TV +RGAAII+AR             DHIRDWVLG+  G WV+MG+ SDGSY +P G+IY FPVT  NGE+ IVQGL IDEFSR+++ +T  EL EE+
Sbjct:  209 VKDLINDAAWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHIRDWVLGS-NGEWVTMGIPSDGSYGIPEGVIYGFPVTTENGEYKIVQGLEIDEFSRERMTVTLNELLEER 322          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDH_DEIRA5.398e-2950.00Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_NITEU9.207e-2944.96Malate dehydrogenase OS=Nitrosomonas europaea GN=m... [more]
MDH_LARHH9.207e-2951.54Malate dehydrogenase OS=Laribacter hongkongensis (... [more]
MDH_SACEN1.202e-2852.31Malate dehydrogenase OS=Saccharopolyspora erythrae... [more]
MDH_BDEBA1.570e-2854.33Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]
MDH_THETH2.051e-2849.61Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET82.051e-2849.61Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET22.051e-2849.61Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_BORA12.051e-2848.46Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_AZOSB2.051e-2853.91Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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