CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURCA (Malate dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_ACIAD (Malate dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            TA GE  +++ + D  W    F+ TV +RGAAII+AR             DH+RDW LGT  G WV+MG+ SDGSY +P G+IY  PVTC NGE+  V+GL IDEFSR+++D T +EL EE+A
Sbjct:  201 TANGEN-LKDKINDAEWNKDVFLPTVGKRGAAIIEARGLSSAASAANAAIDHMRDWALGT-NGKWVTMGIPSDGSYGIPEGVIYGVPVTCENGEYKRVEGLEIDEFSRERMDKTLQELEEERA 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_NITEC (Malate dehydrogenase OS=Nitrosomonas eutropha (strain C91) GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 390
            D+ HA +    G+  V  L+KD  W+   FI TVQ+RGA +I+AR             DH+R+W  GT +G W +MG+ SDGSY +P G+IY FPV C+NG   IVQGL I+ FSR +LD    EL++E
Sbjct:  194 DLYHAEI----GDTKVINLIKDPIWIENYFIPTVQKRGAVVIEARGLSSAASAANAIIDHLRNWFFGTADGDWTTMGILSDGSYEIPEGVIYGFPVICKNGMREIVQGLEINPFSRTRLDAAYNELTQE 318          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  197 DFRFATV----GGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  197 DFRFATV----GGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.329e-27
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D   ATV    G + + +L+ DDAW    FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG+ SDGSY +P G+IY FPV   NGE+ +++ L ID FSR++LD T +EL EE+
Sbjct:  197 DFRFATV----GGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_PROAC (Malate dehydrogenase OS=Propionibacterium acnes GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            DV HA V   AG+K     + ++AW+  EFI TV +RGAAII AR             + +RDW+  TPEG WVSM + SDGSY VP GLI SFPVT  NG+  IVQGL ID+FSR K+D +A+EL++E+
Sbjct:  194 DVFHAEV---AGQKATN--LVNEAWIENEFIPTVAKRGAAIIDARGASSAASAANATVECMRDWMGSTPEGDWVSMAIPSDGSYGVPEGLISSFPVTITNGKVEIVQGLDIDDFSRAKIDASAKELADER 318          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1
Query:   22 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            V TA G+  + +L+ D+ W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T +EL EE+
Sbjct:  198 VATAEGQD-LTKLINDEEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLQELLEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 63/122 (51.64%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA G+  + +L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PVTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGQD-LTKLINDDEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDGTLNELLEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_AQUAR (Malate dehydrogenase OS=Aquaspirillum arcticum GN=mdh PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 62/130 (47.69%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D  +A ++ A+    V++++ DDAW    F+ TV +RGAAII AR             DHI DWVLGT  G W +MG+ SDGSY +P G+I+ FPVT  NGE+ IVQGLSID FS++++++T  EL EE+
Sbjct:  197 DYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 321          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDH_BURCA1.018e-2752.46Malate dehydrogenase OS=Burkholderia cenocepacia (... [more]
MDH_ACIAD1.018e-2750.41Malate dehydrogenase OS=Acinetobacter sp. (strain ... [more]
MDH_NITEC1.329e-2745.74Malate dehydrogenase OS=Nitrosomonas eutropha (str... [more]
MDH_BORPE1.329e-2748.46Malate dehydrogenase OS=Bordetella pertussis GN=md... [more]
MDH_BORPA1.329e-2748.46Malate dehydrogenase OS=Bordetella parapertussis G... [more]
MDH_BORBR1.329e-2748.46Malate dehydrogenase OS=Bordetella bronchiseptica ... [more]
MDH_PROAC1.736e-2751.54Malate dehydrogenase OS=Propionibacterium acnes GN... [more]
MDH_BURXL1.736e-2750.81Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BURPP1.736e-2751.64Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_AQUAR1.736e-2747.69Malate dehydrogenase OS=Aquaspirillum arcticum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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