CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:   43 KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            K V+E + D+ W    F+ TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   ++ FPVT  NGE+ IVQGL ID FS+++++LT +ELSEE+
Sbjct:  206 KSVKEAINDEVWNKDVFLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEER 321
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            D+ HA V    G++   ++  D  WL G+FI TV  RG+AII+AR             DH+ DWVLGTPEG W S+ + S G+Y VP GL+ SFPV   +G W +V+GL ID+FSRK++D +  +L  E+
Sbjct:  197 DIFHARV----GDRSGADIAADREWLTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESER 322
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURCM (Malate dehydrogenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURS3 (Malate dehydrogenase OS=Burkholderia sp. (strain 383) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 62/122 (50.82%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  ++GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVVCENGEYKRIEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURPS (Malate dehydrogenase OS=Burkholderia pseudomallei GN=mdh PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURP6 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 668) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURP1 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=mdh PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURP0 (Malate dehydrogenase OS=Burkholderia pseudomallei (strain 1106a) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURMS (Malate dehydrogenase OS=Burkholderia mallei (strain SAVP1) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
[Close]
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURMA (Malate dehydrogenase OS=Burkholderia mallei GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1 
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDH_HERAR2.268e-2750.43Malate dehydrogenase OS=Herminiimonas arsenicoxyda... [more]
MDH_RHOOB3.868e-2744.62Malate dehydrogenase OS=Rhodococcus opacus (strain... [more]
MDH_BURCM3.868e-2751.64Malate dehydrogenase OS=Burkholderia ambifaria (st... [more]
MDH_BURS35.052e-2750.82Malate dehydrogenase OS=Burkholderia sp. (strain 3... [more]
MDH_BURPS5.052e-2751.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP65.052e-2751.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP15.052e-2751.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURP05.052e-2751.64Malate dehydrogenase OS=Burkholderia pseudomallei ... [more]
MDH_BURMS5.052e-2751.64Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURMA5.052e-2751.64Malate dehydrogenase OS=Burkholderia mallei GN=mdh... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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