CK934097

Overview
NameCK934097
Unique NameCK934097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:739..1426. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURM9 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10229) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURM7 (Malate dehydrogenase OS=Burkholderia mallei (strain NCTC 10247) GN=mdh PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 63/122 (51.64%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   28 TAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            TA GE  ++ L+ DD W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  +IY  PV C NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  200 TAEGESLLK-LINDDVWNRDTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRVEGLEIDAFSREKMDGTLAELLEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_POLSQ (Malate dehydrogenase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   43 KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            K V++ + D AW    FI TV +RGAAII+AR             DHI DWVLGT  G WV+MG+ S G Y +PA +IY FPVTC NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  206 KSVKDSINDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYGIPAEVIYGFPVTCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_JANMA (Malate dehydrogenase OS=Janthinobacterium sp. (strain Marseille) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 60/120 (50.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   34 AGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            A  K V+E + D+ W    F+ TV +RGAAII AR             DH+RDWVLGT  G WV+MG+ SDGSY +P   I+ FPVT  NGE+ IVQGL ID FS+++++LT +EL EE+
Sbjct:  203 ADGKSVKEAINDEVWNKDVFLPTVGKRGAAIIDARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTIFGFPVTVENGEYKIVQGLEIDAFSQERINLTLKELLEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_PSYA2 (Malate dehydrogenase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=mdh PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 65/131 (49.62%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDE-FSRKKLDLTAEELSEEK 393
            D+  +TVN     K   +LV D  W  G +I  VQQRGAAIIKAR              H+R WVLGT E  WVSMGVYS+G Y +  GLIYSFP TC NG+W+IV G+ +   FS++K+  T +ELSEE+
Sbjct:  196 DLTASTVNG----KLALDLV-DRTWYEGTYIPEVQQRGAAIIKARGASSAASAANAAIAHMRTWVLGTDENDWVSMGVYSNGEYGIAKGLIYSFPCTCTNGDWSIVDGVDVSSAFSKEKMAATEQELSEER 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.920e-26
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   43 KPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            K V++ + D AW    FI TV +RGAAII+AR             DHI DWVLGT  G WV+MG+ S G Y++PA +IY FPV C NGE+ +++GL IDEFSR+++  T  EL EE+A
Sbjct:  206 KSVKDSINDAAWNKDVFIPTVGKRGAAIIEARGLSSAASAANAAIDHIHDWVLGT-NGKWVTMGIPSKGEYDIPAEVIYGFPVVCENGEYKMIEGLEIDEFSRERMTHTLNELLEEQA 322          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 61/124 (49.19%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   22 VNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 393
            V TA G+  + +L+ D+ W    FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG+ SDGSY +P  ++Y   VTC NGE+  V+GL ID FSR+K+D T  EL EE+
Sbjct:  198 VATAEGQD-LTKLINDEEWNRNTFIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIVYGVAVTCENGEYKRVEGLQIDAFSREKMDNTLNELLEER 319          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_SYNFM (Malate dehydrogenase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mdh PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 DVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            D+   TV+     +P  +LV D+AW   E+I  V +RGAAII+AR             DH+ DW LGT  G WV+MG+ SDGSY +P G +Y  PVTC  G++  V+GL ID FSR+K+D T +EL+EE+A
Sbjct:  197 DIRFCTVDG----QPAVKLVNDEAWYRNEYIPKVGKRGAAIIEARGLSSAASAANAAIDHMHDWALGT-NGKWVTMGLPSDGSYGIPEGTMYGVPVTCTPGKYERVKGLEIDAFSREKMDFTLKELTEEQA 322          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   46 PVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            P+ E + D AW    FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  206 PIIEAINDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
BLAST of CK934097 vs. ExPASy Swiss-Prot
Match: MDH_XYLFM (Malate dehydrogenase OS=Xylella fastidiosa (strain M12) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   46 PVRELVKDDAWLNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 396
            P+ E + D AW    FI TV +RGAAII+AR             DH+RDW+LG+  G W++MGV SDGSY +P G+I+ FPVT  NGE++IV+ L ID FS+  +D T  EL EE+A
Sbjct:  206 PIIEAINDQAWNANSFIPTVSKRGAAIIEARGLSSAASAANAAIDHMRDWLLGS-NGKWITMGVPSDGSYGIPEGMIFGFPVTTTNGEYSIVKDLPIDTFSKTYIDKTLAELEEERA 321          
The following BLAST results are available for this feature:
BLAST of CK934097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
MDH_BURM95.052e-2751.64Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_BURM75.052e-2751.64Malate dehydrogenase OS=Burkholderia mallei (strai... [more]
MDH_POLSQ6.598e-2750.85Malate dehydrogenase OS=Polynucleobacter sp. (stra... [more]
MDH_JANMA6.598e-2750.00Malate dehydrogenase OS=Janthinobacterium sp. (str... [more]
MDH_PSYA28.617e-2749.62Malate dehydrogenase OS=Psychrobacter arcticus (st... [more]
MDH_POLNS1.920e-2650.00Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_BURP82.507e-2649.19Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_SYNFM3.275e-2646.56Malate dehydrogenase OS=Syntrophobacter fumaroxida... [more]
MDH_XYLFT4.277e-2649.57Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLFM4.277e-2649.57Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_D10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934097 ID=CK934097; Name=CK934097; organism=Citrus sinensis; type=EST; length=709bp
GGGGATGTCAACCATGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGT
CCGTGAACTTGTCAAGGATGATGCATGGTTGAATGGAGAATTCATAACCA
CAGTCCAACAACGTGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGT
GCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCT
TGGAACTCCTGAGGGCACCTGGGTCTCCATGGGGGTATACTCTGATGGTT
CATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGCCGC
AACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTCAAG
GAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCCTCG
CATACTCATGTCTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTTACC
AAGGCCCTTAGCTTTGTCTGAGTTTGGTATAGTTACAGTTTCGAATAAAA
CCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTTCCATC
TTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTTGTTAC
TTTTCCTGGATAAATGGATATTAAAGGCCCATTGTGATTTATGTATCAAA
CTATCAATAACAATTTTTTTTTGTTTTAATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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